# HG changeset patch
# User alenail
# Date 1459796523 14400
# Node ID a30aa2806375b131983c2b1397f80f2dde6e5402
# Parent  007d99e2ae919266f231bba04b812e18f34a48aa
Uploaded

diff -r 007d99e2ae91 -r a30aa2806375 chipsequtil/._map_to_known_genes.py
Binary file chipsequtil/._map_to_known_genes.py has changed
diff -r 007d99e2ae91 -r a30aa2806375 chipsequtil/._map_to_known_genes.xml
Binary file chipsequtil/._map_to_known_genes.xml has changed
diff -r 007d99e2ae91 -r a30aa2806375 chipsequtil/map_to_known_genes.xml
--- a/chipsequtil/map_to_known_genes.xml	Mon Apr 04 14:56:57 2016 -0400
+++ b/chipsequtil/map_to_known_genes.xml	Mon Apr 04 15:02:03 2016 -0400
@@ -23,7 +23,6 @@
     <param name="knownGeneFile" type="data" label="knownGene file" help="" optional="false" />
     <param name="knownGeneRef" type="data" label="knownGene xRef file" help="" optional="false" />
     <param name="macsPeaksFile" type="data" label="Peaks File" help="" optional="false" />
-    <param name="peaksOutput" type="text" label="Output filename" help="filename to output mapped peaks to" optional="false" />
 
     <param name="upst_win" type="integer" label="Upstream Window" help="Window width in base pairs to consider promoter region [default: %default]" optional="false" value="5500" />
     <param name="dnst_win" type="integer" label="Downstream Window" help="Window width in base pairs to consider downstream region [default: %default]" optional="false" value="2500" />
@@ -39,7 +38,7 @@
     <param name="intergenic" checked="false" label="Write intergenic peaks to the gene file as well with None as gene ID" type="boolean" truevalue="--intergenic" falsevalue="" help="" />
   </inputs>
   <outputs>
-    <data format="txt" hidden="false" name="default"/>
+    <data format="txt" hidden="false" name="peaksOutput"/>
   </outputs>
   <help></help>
 </tool>