Mercurial > repos > alenail > pieplot_macs
view pieplot_macs/pieplots_macs.xml @ 6:d7baa700a930 draft
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author | alenail |
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date | Thu, 14 Apr 2016 17:45:12 -0400 |
parents | 677676cddd02 |
children | d8e0627b3c87 |
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<tool id="pieplots_macs" name="Pieplots MACS" version="0.1"> <description> Peaks are assigned to the closest gene and then categorized according to their location at different genomic regions (promoter, intron, exon, or after the gene). Sites >10kb away from any gene are considered intergenic. </description> <parallelism method="basic"></parallelism> <requirements> <requirement type="package" version="0.14.1">pandas</requirement> <requirement type="package" version="1.4">matplotlib</requirement> </requirements> <command interpreter="python"> pieplots_macs.py --genefile $genefile --peakfile $peakfile $MACS --outfile $out </command> <inputs> <param name="genefile" type="data" label="Gene file (map_peaks_to_genes)" help="" optional="false" /> <param name="peakfile" type="data" label="Peaks file (narrowpeaks)" help="" optional="false" /> <param name="MACS" checked="false" label="Set this value if you have MACS peaks" type="boolean" truevalue="--MACS" falsevalue="" help="" /> </inputs> <outputs> <data name="out" format="pdf" hidden="false" /> </outputs> <help></help> </tool>