view [APliBio]Nebula tools suite/Nebula/ExtractCentralRegions/extractCentralRegions_wrapper.xml @ 3:1c699789d6d3 draft

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<tool id="extractCentralRegions" name="ExtractCentralRegions" version="1.0">
  <description>Extract regions around peak maxima for a .bed file with peak coordinates</description>
  <command interpreter="perl">extractCentralRegions.pl -f $inputfile -l $left -o $output -head $has_header
 </command>
   <inputs>
   
    <param name="inputfile" type="data" label="ChIP peaks" value="ChIP peaks File" format="bed,txt"/>   
    <param name="has_header" type="select" label="Your data file has a header?">
        <option value="0" selected="true">No</option>
        <option value="1">Yes</option>
    </param>  
    <param name="left" type="integer" label="Legth of the central region" value="300"/>
  </inputs>
  <outputs>   
    <data name="output" format="bed" label="central regions for ${inputfile.name}"/>      
  </outputs>    
  <help>
**What it does**

This tool extract central regions of ChIP-seq peaks

  </help>
</tool>