Mercurial > repos > alermine > nebula
changeset 2:5d392b477172 draft
Uploaded
author | alermine |
---|---|
date | Wed, 14 Nov 2012 06:01:02 -0500 |
parents | 0ec82f1785af |
children | 1c699789d6d3 |
files | [APliBio]Nebula tools suite/Nebula/FindPeaks/findPeaks_wrapper.sh |
diffstat | 1 files changed, 1 insertions(+), 1 deletions(-) [+] |
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--- a/[APliBio]Nebula tools suite/Nebula/FindPeaks/findPeaks_wrapper.sh Wed Nov 14 05:59:25 2012 -0500 +++ b/[APliBio]Nebula tools suite/Nebula/FindPeaks/findPeaks_wrapper.sh Wed Nov 14 06:01:02 2012 -0500 @@ -107,7 +107,7 @@ fi if [[ $ALIGNER == "sam" && $IFBAM == 0 ]]; then - samtools view -S -h $INPUT -b | $SAMTOOLS_BIN_DIR/samtools sort -m 4000000000 -o - $INPUT.sorted | /bioinfo/local/samtools/samtools view -h - >$INPUT.tmp.sam 2>> $OLOG + samtools view -S -h $INPUT -b | $SAMTOOLS_BIN_DIR/samtools sort -m 4000000000 -o - $INPUT.sorted | samtools view -h - >$INPUT.tmp.sam 2>> $OLOG fi if [[ $ALIGNER == "sam" && $IFBAM == 1 ]]; then