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comparison gecco.xml @ 20:64b724dd8d04 draft

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Regenerate Galaxy test files with Pyrodigal `v2.1.0`
author althonos
date Mon, 27 Mar 2023 13:32:49 +0000
parents cc91d730cc4f
children
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19:cc91d730cc4f 20:64b724dd8d04
26 gecco -vv run 26 gecco -vv run
27 --format $input.ext 27 --format $input.ext
28 --genome input_tempfile.$file_extension 28 --genome input_tempfile.$file_extension
29 --postproc $postproc 29 --postproc $postproc
30 --force-tsv 30 --force-tsv
31 --jobs "\${GALAXY_SLOTS:-4}"
31 #if $edge_distance 32 #if $edge_distance
32 --edge-distance $edge_distance 33 --edge-distance $edge_distance
33 #end if 34 #end if
34 #if $mask 35 #if $mask
35 --mask 36 --mask