Mercurial > repos > althonos > gecco
comparison CHANGELOG.md @ 21:6ba37b7dea42 draft
Release v0.9.7
author | althonos |
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date | Fri, 26 May 2023 12:10:43 +0000 |
parents | cc91d730cc4f |
children | a41a2bcb0b91 |
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20:64b724dd8d04 | 21:6ba37b7dea42 |
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3 | 3 |
4 The format is based on [Keep a Changelog](http://keepachangelog.com/en/1.0.0/) | 4 The format is based on [Keep a Changelog](http://keepachangelog.com/en/1.0.0/) |
5 and this project adheres to [Semantic Versioning](http://semver.org/spec/v2.0.0.html). | 5 and this project adheres to [Semantic Versioning](http://semver.org/spec/v2.0.0.html). |
6 | 6 |
7 ## [Unreleased] | 7 ## [Unreleased] |
8 [Unreleased]: https://github.com/zellerlab/GECCO/compare/v0.9.6...master | 8 [Unreleased]: https://github.com/zellerlab/GECCO/compare/v0.9.7...master |
9 | |
10 | |
11 ## [v0.9.7] - 2023-05-26 | |
12 [v0.9.7]: https://github.com/zellerlab/GECCO/compare/v0.9.6...v0.9.7 | |
13 | |
14 ### Added | |
15 - Command line option to annotate proteins using bitscore cutoffs from HMMs. | |
16 - Command line option to disentangle overlapping domains after HMM annotation. | |
17 | |
18 ### Changed | |
19 - Bump `pyhmmer` dependency to `v0.8.0`. | |
20 - Bump `pyrodigal` dependency to `v2.1.0`. | |
21 - Rewrite `gecco.model` to use `polars` for managing tabular data. | |
22 - Replace `pandas` dependencies with `polars` | |
23 - Update `gecco run` to skip type classification for tasks without an assigned cluster type. | |
24 | |
25 ### Fixed | |
26 - `Cluster.to_seq_record` crashing when called on a cluster with `types` attribute unset. | |
27 - Progress bar resetting when performing domain annotation with multiple HMMs. | |
28 | |
29 ### Removed | |
30 - Support for Python 3.7. | |
9 | 31 |
10 | 32 |
11 ## [v0.9.6] - 2023-01-11 | 33 ## [v0.9.6] - 2023-01-11 |
12 [v0.9.6]: https://github.com/zellerlab/GECCO/compare/v0.9.5...v0.9.6 | 34 [v0.9.6]: https://github.com/zellerlab/GECCO/compare/v0.9.5...v0.9.6 |
13 | 35 |