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Release v0.9.7
author althonos
date Fri, 26 May 2023 12:10:43 +0000
parents cc91d730cc4f
children a41a2bcb0b91
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20:64b724dd8d04 21:6ba37b7dea42
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4 The format is based on [Keep a Changelog](http://keepachangelog.com/en/1.0.0/) 4 The format is based on [Keep a Changelog](http://keepachangelog.com/en/1.0.0/)
5 and this project adheres to [Semantic Versioning](http://semver.org/spec/v2.0.0.html). 5 and this project adheres to [Semantic Versioning](http://semver.org/spec/v2.0.0.html).
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7 ## [Unreleased] 7 ## [Unreleased]
8 [Unreleased]: https://github.com/zellerlab/GECCO/compare/v0.9.6...master 8 [Unreleased]: https://github.com/zellerlab/GECCO/compare/v0.9.7...master
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11 ## [v0.9.7] - 2023-05-26
12 [v0.9.7]: https://github.com/zellerlab/GECCO/compare/v0.9.6...v0.9.7
13
14 ### Added
15 - Command line option to annotate proteins using bitscore cutoffs from HMMs.
16 - Command line option to disentangle overlapping domains after HMM annotation.
17
18 ### Changed
19 - Bump `pyhmmer` dependency to `v0.8.0`.
20 - Bump `pyrodigal` dependency to `v2.1.0`.
21 - Rewrite `gecco.model` to use `polars` for managing tabular data.
22 - Replace `pandas` dependencies with `polars`
23 - Update `gecco run` to skip type classification for tasks without an assigned cluster type.
24
25 ### Fixed
26 - `Cluster.to_seq_record` crashing when called on a cluster with `types` attribute unset.
27 - Progress bar resetting when performing domain annotation with multiple HMMs.
28
29 ### Removed
30 - Support for Python 3.7.
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11 ## [v0.9.6] - 2023-01-11 33 ## [v0.9.6] - 2023-01-11
12 [v0.9.6]: https://github.com/zellerlab/GECCO/compare/v0.9.5...v0.9.6 34 [v0.9.6]: https://github.com/zellerlab/GECCO/compare/v0.9.5...v0.9.6
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