comparison CHANGELOG.md @ 12:e6597056a493 draft

"Release v0.9.1-alpha3"

11:40a525d0e1fe

The format is based on [Keep a Changelog](http://keepachangelog.com/en/1.0.0/)
and this project adheres to [Semantic Versioning](http://semver.org/spec/v2.0.0.html).

## [Unreleased]
[Unreleased]: https://git.embl.de/grp-zeller/GECCO/compare/v0.9.1-alpha2...master

## [v0.9.1-alpha2] - 2022-03-23
[v0.9.1-alpha1]: https://git.embl.de/grp-zeller/GECCO/compare/v0.9.1-alpha1...v0.9.1-alpha2

### Fixed
- `TypeClassifier.trained` not being able to read unknown types from type tables.

## [v0.9.1-alpha1] - 2022-03-20

12:e6597056a493

The format is based on [Keep a Changelog](http://keepachangelog.com/en/1.0.0/)
and this project adheres to [Semantic Versioning](http://semver.org/spec/v2.0.0.html).

## [Unreleased]
[Unreleased]: https://git.embl.de/grp-zeller/GECCO/compare/v0.9.1-alpha3...master

## [v0.9.1-alpha3] - 2022-03-23
[v0.9.1-alpha3]: https://git.embl.de/grp-zeller/GECCO/compare/v0.9.1-alpha2...v0.9.1-alpha3

### Added
- `gecco.model.GeneTable` class to store gene coordinates independently of protein domains.

### Changed
- Refactored implementation of `load` and `dump` methods for `Table` classes into a dedicated base class.
- `gecco run` and `gecco annotate` now output a gene table in addition to the feature and cluster tables.
- `gecco train` expects a gene table instead of a GFF file for the gene coordinates.

## [v0.9.1-alpha2] - 2022-03-23
[v0.9.1-alpha2]: https://git.embl.de/grp-zeller/GECCO/compare/v0.9.1-alpha1...v0.9.1-alpha2

### Fixed
- `TypeClassifier.trained` not being able to read unknown types from type tables.

## [v0.9.1-alpha1] - 2022-03-20