diff CHANGELOG.md @ 14:56b924f62165 draft

"Update tests files for Galaxy tool wrapper"

--- a/CHANGELOG.md	Thu Mar 31 18:00:15 2022 +0000
+++ b/CHANGELOG.md	Tue Apr 05 23:18:49 2022 +0000
@@ -5,7 +5,14 @@
 and this project adheres to [Semantic Versioning](http://semver.org/spec/v2.0.0.html).
 
 ## [Unreleased]
-[Unreleased]: https://git.embl.de/grp-zeller/GECCO/compare/v0.9.1-alpha4...master
+[Unreleased]: https://git.embl.de/grp-zeller/GECCO/compare/v0.9.1...master
+
+## [v0.9.1] - 2022-04-05
+[v0.9.1]: https://git.embl.de/grp-zeller/GECCO/compare/v0.9.1-alpha4...v0.9.1
+
+### Changed
+- Make the `genes.tsv` and `features.tsv` table contain all genes even when they come from a contig too short to be processed by the CRF sliding window.
+- Replaced the `--force-clusters-tsv` flag with a `--force-tsv` flag to force writing TSV tables even when no genes or clusters were found in `gecco run` or `gecco annotate`.
 
 ## [v0.9.1-alpha4] - 2022-03-31
 [v0.9.1-alpha4]: https://git.embl.de/grp-zeller/GECCO/compare/v0.9.1-alpha3...v0.9.1-alpha4
@@ -15,7 +22,7 @@
 $ python -m gecco -vv train --c1 0.4 --c2 0 --select 0.25 --window-size 20 \
          -f mibig-2.0.proG2.Pfam-v35.0.features.tsv \
          -c mibig-2.0.proG2.clusters.tsv \
-         -g GECCO-data/data/embeddings/mibig-2.0.proG2.genes.gff \
+         -g GECCO-data/data/embeddings/mibig-2.0.proG2.genes.tsv \
          -o models/v0.9.1-alpha4
 ```