annotate predict_activity.xml @ 1:cea1634edfd8 draft default tip

planemo upload commit b0cc82b1aceca7a8d2d371eb653b44b5c61458d6-dirty

<tool id="predict_activity" name="Predict Activity" version="1.0">
    <description>predicts activity based on given model</description>
    <requirements>
        <requirement type="package" version="3.2.1">R</requirement>
        <requirement type="package" version="1.0">carettools</requirement>
    </requirements>
    <stdio>
        <exit_code range="1:" />
    </stdio>

    <command interpreter="Rscript">predict_activity.R  $file1 $model $output1  2>/dev/null </command>

    <inputs>
        <param name="model" type="data" format="rdata" label="Select Model" help="Select built model obtained from caret tool 'Create script from the template file'." />
        <param name="file1" type="data" format="csv"  label="Select file have descriptor data for activity prediction" help="csv format" />
    </inputs>

    <outputs>
        <data format="txt" name="output1" label="Prediction on $file1.name" />
    </outputs>

    <tests>
 	<test>
          	<param name="model" value="MODEL.rdata"  />
          	<param name="file1" value="Descriptors_File_of_prediction_set.csv" />
          	<output name="output1" file="Prediction_on_Descriptors_File_of_prediction_set.txt" compare="sim_size" delta="90000" />
 	</test>
    </tests>

<help>

.. class:: infomark

Make sure this file **must** contain **all** or **more features** than **input** "csv file" used for **model building**

----------

**Input "csv file" must be as follows**

----------


Example file:-



# example.csv

	 feature1,feature2,feature3,..,featureN

ro1	234,2.3,34,7,..,0.9

ro2	432,3.4,23.1,12,..,0.12

ro3	692,23,12.2,19,..,0.14


-----------

**MODEL**

Choose model file received from model building step.

Model file has "data" file format can be seen by 

clicking on output files shown in history . 

</help>

</tool>