diff select_compound.R @ 0:639d350de274 draft

planemo upload commit a1f4dd8eb560c649391ada1a6bb9505893a35272-dirty

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/select_compound.R	Fri Jun 01 04:38:30 2018 -0400
@@ -0,0 +1,19 @@
+args <- commandArgs(T)
+arg1 <- args[1] ## Reae Input prediction file
+arg2 <- args[2] ## Less Than  
+arg3 <- args[3] ## Greater Than or equal too
+arg4 <- args[4] ## Active / Inactive
+arg5 <- args[5] ## define output file name
+asd <- read.table(arg1,row.names=1,header=T)
+if (arg4 == "Active") {
+refined <- asd[asd[,1] >= as.numeric(arg3) & asd[,1] <= as.numeric(arg2),] 
+compound  <- rownames(refined)
+refined <- cbind(compound,refined)
+} else if((arg4 == "Inactive") ){
+#refined <- asd[asd[,1] <= as.numeric(arg2),] 
+refined <- asd[asd[,2] >= as.numeric(arg3) & asd[,2] <= as.numeric(arg2),]
+compound  <- rownames(refined)
+refined <- cbind(compound,refined)}
+###write.table(dw,file=args3,row.names=FALSE,sep="\t")
+write.table(refined,file=arg5,row.names=FALSE,sep="\t")
+