annotate tool_dependencies.xml @ 0:d8ebc06d55ca draft default tip

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author anmoljh
date Thu, 31 May 2018 11:04:46 -0400
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1 <?xml version="1.0"?>
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2 <tool_dependency>
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3 <package name="R" version="3.2.1">
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4 <repository changeset_revision="d9f7d84125b7" name="package_r_3_2_1" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
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5 </package>
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6
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7 <package name="carettools" version="1.0">
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8 <install version="1.0">
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9 <actions>
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10 <action type="set_environment_for_install">
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12 <package name="R" version="3.2.1" />
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13 </repository>
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1004 <action type="shell_command">R CMD INSTALL tables_0.7.79.tar.gz</action>
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1007 </action>
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1008 <action type="shell_command">R CMD INSTALL testit_0.4.tar.gz</action>
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1011 </action>
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1012 <action type="shell_command">R CMD INSTALL timeDate_3012.100.tar.gz</action>
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1015 </action>
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1016 <action type="shell_command">R CMD INSTALL tis_1.30.tar.gz</action>
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1019 </action>
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1020 <action type="shell_command">R CMD INSTALL tripack_1.3-6.tar.gz</action>
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1023 </action>
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1024 <action type="shell_command">R CMD INSTALL truncreg_0.2-1.tar.gz</action>
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1027 </action>
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1028 <action type="shell_command">R CMD INSTALL tseries_0.10-34.tar.gz</action>
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1031 </action>
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1032 <action type="shell_command">R CMD INSTALL TSA_1.01.tar.gz</action-->
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1034 https://raw.githubusercontent.com/Deep2106/R-3.1.3caret/CARET/DataMiningWORK/GIT_GCAC_CODES/GIT/UPLOAD2/urca_1.2-8.tar.gz
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1035 </action>
d8ebc06d55ca planemo upload commit a1f4dd8eb560c649391ada1a6bb9505893a35272
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1036 <action type="shell_command">R CMD INSTALL urca_1.2-8.tar.gz</action>
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1039 </action>
d8ebc06d55ca planemo upload commit a1f4dd8eb560c649391ada1a6bb9505893a35272
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1040 <action type="shell_command">R CMD INSTALL vcd_1.4-1.tar.gz</action>
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1042 https://raw.githubusercontent.com/Deep2106/R-3.1.3caret/CARET/DataMiningWORK/GIT_GCAC_CODES/GIT/UPLOAD2/VGAM_0.9-8.tar.gz
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1043 </action>
d8ebc06d55ca planemo upload commit a1f4dd8eb560c649391ada1a6bb9505893a35272
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1044 <action type="shell_command">R CMD INSTALL VGAM_0.9-8.tar.gz</action>
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diff changeset
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1047 </action>
d8ebc06d55ca planemo upload commit a1f4dd8eb560c649391ada1a6bb9505893a35272
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1048 <action type="shell_command">R CMD INSTALL VGAMdata_0.9-7.tar.gz</action>
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diff changeset
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1050 https://raw.githubusercontent.com/Deep2106/R-3.1.3caret/CARET/DataMiningWORK/GIT_GCAC_CODES/GIT/UPLOAD2/Zelig_4.2-1.tar.gz
d8ebc06d55ca planemo upload commit a1f4dd8eb560c649391ada1a6bb9505893a35272
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1051 </action>
d8ebc06d55ca planemo upload commit a1f4dd8eb560c649391ada1a6bb9505893a35272
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1052 <action type="shell_command">R CMD INSTALL Zelig_4.2-1.tar.gz</action>
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parents:
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1053 <!--action type="download_file" sha256sum="6c7aa6c030109f18caa9d79d7aa35dadec588b9256b801bd41be7b59081b3f45">
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diff changeset
1054 https://raw.githubusercontent.com/Deep2106/R-3.1.3caret/CARET/DataMiningWORK/GIT_GCAC_CODES/GIT/UPLOAD2/Rmpi_0.6-5.tar.gz
d8ebc06d55ca planemo upload commit a1f4dd8eb560c649391ada1a6bb9505893a35272
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1055 </action>
d8ebc06d55ca planemo upload commit a1f4dd8eb560c649391ada1a6bb9505893a35272
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1056 <action type="shell_command">R CMD INSTALL Rmpi_0.6-5.tar.gz</action-->
d8ebc06d55ca planemo upload commit a1f4dd8eb560c649391ada1a6bb9505893a35272
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d8ebc06d55ca planemo upload commit a1f4dd8eb560c649391ada1a6bb9505893a35272
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1058 https://raw.githubusercontent.com/Deep2106/R-3.1.3caret/CARET/DataMiningWORK/GIT_GCAC_CODES/GIT/uplod/caTools_1.17.1.tar.gz
d8ebc06d55ca planemo upload commit a1f4dd8eb560c649391ada1a6bb9505893a35272
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1059 </action>
d8ebc06d55ca planemo upload commit a1f4dd8eb560c649391ada1a6bb9505893a35272
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parents:
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1060 <action type="shell_command">R CMD INSTALL caTools_1.17.1.tar.gz</action>
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d8ebc06d55ca planemo upload commit a1f4dd8eb560c649391ada1a6bb9505893a35272
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1062 https://raw.githubusercontent.com/Deep2106/R-3.1.3caret/CARET/DataMiningWORK/GIT_GCAC_CODES/GIT/uplod/pbapply_1.1-1.tar.gz
d8ebc06d55ca planemo upload commit a1f4dd8eb560c649391ada1a6bb9505893a35272
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1063 </action>
d8ebc06d55ca planemo upload commit a1f4dd8eb560c649391ada1a6bb9505893a35272
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parents:
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1064 <action type="shell_command">R CMD INSTALL pbapply_1.1-1.tar.gz</action>
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1067 </action>
d8ebc06d55ca planemo upload commit a1f4dd8eb560c649391ada1a6bb9505893a35272
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parents:
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1068 <action type="shell_command">R CMD INSTALL caretEnsemble_1.0.0.tar.gz</action>
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1070 https://raw.githubusercontent.com/Deep2106/R-3.1.3caret/CARET/RRF_1.6.tar.gz
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1071 </action>
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1072 <action type="shell_command">R CMD INSTALL RRF_1.6.tar.gz</action>
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1075 </action>
d8ebc06d55ca planemo upload commit a1f4dd8eb560c649391ada1a6bb9505893a35272
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1076 <action type="shell_command">R CMD INSTALL nnls_1.4.tar.gz</action>
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1078 https://raw.githubusercontent.com/Deep2106/R-3.1.3caret/CARET/mboost_2.4-0.tar.gz
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1079 </action>
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1080 <action type="shell_command">R CMD INSTALL mboost_2.4-0.tar.gz</action>
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1081
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1082 </actions>
d8ebc06d55ca planemo upload commit a1f4dd8eb560c649391ada1a6bb9505893a35272
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1083 </install>
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1084
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1085 <readme>caret tools installed successfully.</readme>
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1086
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1087 </package>
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1088 </tool_dependency>