# HG changeset patch
# User anmoljh
# Date 1527779086 14400
# Node ID d8ebc06d55ca1b254517e4bee75c0860baf2b128

planemo upload commit a1f4dd8eb560c649391ada1a6bb9505893a35272

diff -r 000000000000 -r d8ebc06d55ca tool_dependencies.xml
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool_dependencies.xml	Thu May 31 11:04:46 2018 -0400
@@ -0,0 +1,1088 @@
+<?xml version="1.0"?>
+<tool_dependency>
+   <package name="R" version="3.2.1">
+	   <repository changeset_revision="d9f7d84125b7" name="package_r_3_2_1" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
+   </package>
+
+   <package name="carettools" version="1.0">
+     <install version="1.0">
+      <actions>
+        <action type="set_environment_for_install">
+		<repository changeset_revision="d9f7d84125b7" name="package_r_3_2_1" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" >
+                        <package name="R" version="3.2.1" />
+        	</repository>
+        </action>
+               
+	<action type="download_file" sha256sum="559c0d61c4e58f605c2871320f8fe9a4fa19d4fd85b67c235d7a452b6720214b">
+		https://raw.githubusercontent.com/Deep2106/R-3.1.3caret/CARET/DataMiningWORK/GIT_GCAC_CODES/GIT/UPLOAD2/Rcpp_0.12.1.tar.gz
+	</action>
+	<action type="shell_command">R CMD INSTALL Rcpp_0.12.1.tar.gz</action>
+	<action type="shell_command">cp $R_ROOT_DIR/lib/libblas.so.3gf $R_ROOT_DIR/lib/libblas.so.3</action>
+	<action type="shell_command">cp $R_ROOT_DIR/lib/libblas.so.3 $R_ROOT_DIR/lib/R/lib</action>
+	<action type="download_file" sha256sum="652419424a63e93cf0db3b04a3c0695094760626d875078a032e748a68460a38">
+		https://raw.githubusercontent.com/Deep2106/R-3.1.3caret/CARET/DataMiningWORK/GIT_GCAC_CODES/GIT/UPLOAD2/Matrix_1.2-2.tar.gz
+	</action>
+	<action type="shell_command">R CMD INSTALL Matrix_1.2-2.tar.gz</action>
+	<action type="download_file" sha256sum="29ada6457e96d9ec03a7102bdf0f24fe4a186a0a5284c2e37579f3f6e9838f98">
+		https://raw.githubusercontent.com/Deep2106/R-3.1.3caret/CARET/DataMiningWORK/GIT_GCAC_CODES/GIT/UPLOAD2/RcppEigen_0.3.2.5.0.tar.gz
+	</action>
+	<action type="shell_command">R CMD INSTALL RcppEigen_0.3.2.5.0.tar.gz</action>
+	<action type="download_file" sha256sum="cfa193a4a9c55cb08f3faf4ab09c11b70412523767f19894e4eafc6e94cccd0c">
+		https://raw.githubusercontent.com/Deep2106/R-3.1.3caret/CARET/DataMiningWORK/GIT_GCAC_CODES/GIT/UPLOAD2/minqa_1.2.4.tar.gz
+	</action>
+	<action type="shell_command">R CMD INSTALL minqa_1.2.4.tar.gz</action>
+	<action type="download_file" sha256sum="8f9d70e1e1aeab1a1a54b236ea8c8157f0c6444249126f706b54b62499034695">
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+	</action>
+	<action type="shell_command">R CMD INSTALL nloptr_1.0.4.tar.gz</action>
+	<action type="download_file" sha256sum="02e294859b5eb70d665ac2c3b66120e93d22236580450a81e2ec2d4467b89b89">
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+	</action>
+	<action type="shell_command">R CMD INSTALL lme4_1.1-9.tar.gz</action>
+	<action type="download_file" sha256sum="7048fbc0ac17d7e3420fe68081d0e0a2176b1154ee3191d53558ea9724c7c980">
+		https://raw.githubusercontent.com/Deep2106/R-3.1.3caret/CARET/DataMiningWORK/GIT_GCAC_CODES/GIT/UPLOAD2/e1071_1.6-7.tar.gz
+	</action>
+	<action type="shell_command">R CMD INSTALL e1071_1.6-7.tar.gz</action>
+	<action type="download_file" sha256sum="3575d2d9974d37beca18be67d18bb2d65953e9925d4c7cceceaa898008641d98">
+		https://raw.githubusercontent.com/Deep2106/R-3.1.3caret/CARET/DataMiningWORK/GIT_GCAC_CODES/GIT/UPLOAD2/TeachingDemos_2.9.tar.gz
+	</action>
+	<action type="shell_command">R CMD INSTALL TeachingDemos_2.9.tar.gz</action>
+	<action type="download_file" sha256sum="d165689525f424f62af3a60311cbfac34444ba282601331055dc90fbcf75ee8d">
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+	</action>
+	<action type="shell_command">R CMD INSTALL plotrix_3.5-12.tar.gz</action>
+	<action type="download_file" sha256sum="8a41f985d352b9167c09511568b1bf415f6f994cf011eb617dfb84f1b4e1222c">
+		https://raw.githubusercontent.com/Deep2106/R-3.1.3caret/CARET/DataMiningWORK/GIT_GCAC_CODES/GIT/UPLOAD2/plotmo_3.1.4.tar.gz
+	</action>
+	<action type="shell_command">R CMD INSTALL plotmo_3.1.4.tar.gz</action>
+	<action type="download_file" sha256sum="f1aafc0e9df537a2844a5049d6fe4fec5d049a52647f39cb4ba16d23d339bb69">
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+	</action>
+	<action type="shell_command">R CMD INSTALL earth_4.4.2.tar.gz</action>
+	<action type="download_file" sha256sum="19b82a4b680977e5e101d7cd2dbdb227cabd0a8a929368c213aa95a91d3a737a">
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+	</action>
+	<action type="shell_command">R CMD INSTALL fastICA_1.2-0.tar.gz</action>
+	<action type="download_file" sha256sum="1bf74e5a5603b2b2d3deecb801ca1796e2b2c3f08c488c497725c5cb205798ff">
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+	</action>
+	<action type="shell_command">R CMD INSTALL iterators_1.0.7.tar.gz</action>
+	<action type="download_file" sha256sum="d4fd8f090029d9b9168ae415e6ab13ef017f06f1879488a2e0af4bcfd999ff24">
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+	</action>
+	<action type="shell_command">R CMD INSTALL foreach_1.4.2.tar.gz</action>
+	<action type="download_file" sha256sum="cd5ea56a1694b58ea99b03c6f1646e8368dccd610632f0b6e44b75768f473d03">
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+	</action>
+	<action type="shell_command">R CMD INSTALL gam_1.12.tar.gz</action>
+	<action type="download_file" sha256sum="6dea14c0c5ced86eaebd0b4663821bc6b3bd44f3034282a0a7bc0acb21689c84">
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+	</action>
+	<action type="shell_command">R CMD INSTALL numDeriv_2014.2-1.tar.gz</action>
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+	</action>
+	<action type="shell_command">R CMD INSTALL lava_1.4.1.tar.gz</action>
+	<action type="download_file" sha256sum="fb793ad6149653ff26b45d2ba1dda6e4c5d6b9a4c33887258e50316322e95e62">
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+	</action>
+	<action type="shell_command">R CMD INSTALL prodlim_1.5.1.tar.gz</action>
+	<action type="download_file" sha256sum="c5ddaed288d38118876a94c7aa5000dce0070b8d736dba12de64a9cb04dc2d85">
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+	</action>
+	<action type="shell_command">R CMD INSTALL rpart_4.1-10.tar.gz</action>
+	<action type="download_file" sha256sum="3a466417808e17c4c6cd0f2b577407355d9da79a341558b42a8b76e24b6f6ba4">
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+	</action>
+	<action type="shell_command">R CMD INSTALL ipred_0.9-5.tar.gz</action>
+	<action type="download_file" sha256sum="1da92fcfa05e2f6fc794802a96f728bd4f0a8e11443bcc986bcce6c1f8440ecc">
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+	</action>
+	<action type="shell_command">R CMD INSTALL kernlab_0.9-22.tar.gz</action>
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+	</action>
+	<action type="shell_command">R CMD INSTALL combinat_0.0-8.tar.gz</action>
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+	</action>
+	<action type="shell_command">R CMD INSTALL klaR_0.6-12.tar.gz</action>
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+	<action type="shell_command">R CMD INSTALL ellipse_0.3-8.tar.gz</action>
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+	<action type="shell_command">R CMD INSTALL mda_0.4-7.tar.gz</action>
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+	</action>
+	<action type="shell_command">R CMD INSTALL mlbench_2.1-1.tar.gz</action>
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+	</action>
+	<action type="shell_command">R CMD INSTALL lattice_0.20-33.tar.gz</action>
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+	<action type="shell_command">R CMD INSTALL zoo_1.7-12.tar.gz</action>
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+	</action>
+	<action type="shell_command">R CMD INSTALL sandwich_2.3-3.tar.gz</action>
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+	<action type="shell_command">R CMD INSTALL strucchange_1.5-1.tar.gz</action>
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+	<action type="shell_command">R CMD INSTALL modeltools_0.2-21.tar.gz</action>
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+	<action type="shell_command">R CMD INSTALL mvtnorm_1.0-3.tar.gz</action>
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+	<action type="shell_command">R CMD INSTALL coin_1.0-24.tar.gz</action>
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+	<action type="shell_command">R CMD INSTALL party_1.0-18.tar.gz</action>
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+	<action type="shell_command">R CMD INSTALL partykit_1.0-3.tar.gz</action>
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+	<action type="shell_command">R CMD INSTALL pls_2.4-3.tar.gz</action>
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+	<action type="shell_command">R CMD INSTALL plyr_1.8.3.tar.gz</action>
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+	<action type="shell_command">R CMD INSTALL survey_3.30-3.tar.gz</action>
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+	<action type="shell_command">R CMD INSTALL tables_0.7.79.tar.gz</action>
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+	</action>
+	<action type="shell_command">R CMD INSTALL testit_0.4.tar.gz</action>
+	<action type="download_file" sha256sum="6262ef7ca9f5eeb9db8229d6bb7a51d46d467a4fa73e2ccc5b4b78e18780c432">
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+	</action>
+	<action type="shell_command">R CMD INSTALL timeDate_3012.100.tar.gz</action>
+	<action type="download_file" sha256sum="fcff870eedce271d30955c324c6f1dc1d08881cb4913eeb83089608cbbb21b2f">
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+	</action>
+	<action type="shell_command">R CMD INSTALL tis_1.30.tar.gz</action>
+	<action type="download_file" sha256sum="227815323ca5019d54cc0fa24c41066be68a61eb2e29026eb4d3bb9f55f876b6">
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+	</action>
+	<action type="shell_command">R CMD INSTALL tripack_1.3-6.tar.gz</action>
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+	</action>
+	<action type="shell_command">R CMD INSTALL truncreg_0.2-1.tar.gz</action>
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+	</action>
+	<action type="shell_command">R CMD INSTALL tseries_0.10-34.tar.gz</action>
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+	</action>
+	<action type="shell_command">R CMD INSTALL TSA_1.01.tar.gz</action-->
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+	</action>
+	<action type="shell_command">R CMD INSTALL urca_1.2-8.tar.gz</action>
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+	</action>
+	<action type="shell_command">R CMD INSTALL vcd_1.4-1.tar.gz</action>
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+	</action>
+	<action type="shell_command">R CMD INSTALL VGAM_0.9-8.tar.gz</action>
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+	</action>
+	<action type="shell_command">R CMD INSTALL VGAMdata_0.9-7.tar.gz</action>
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+	</action>
+	<action type="shell_command">R CMD INSTALL Zelig_4.2-1.tar.gz</action>
+	<!--action type="download_file" sha256sum="6c7aa6c030109f18caa9d79d7aa35dadec588b9256b801bd41be7b59081b3f45">
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+	</action>
+	<action type="shell_command">R CMD INSTALL Rmpi_0.6-5.tar.gz</action-->
+	<action type="download_file" sha256sum="d32a73febf00930355cc00f3e4e71357412e0f163faae6a4bf7f552cacfe9af4">
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+	</action>
+	<action type="shell_command">R CMD INSTALL caTools_1.17.1.tar.gz</action>
+	<action type="download_file" sha256sum="c2123d4362b8924afddf1df34f80c43af9e6fb7af7783c84d8e2055cadbd50b7">
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+	</action>
+	<action type="shell_command">R CMD INSTALL pbapply_1.1-1.tar.gz</action>
+	<action type="download_file" sha256sum="fe47871bfd0f97b12a7fbb0eed75bb3c6f169bfbca72a4b301f19101ba5f119b">
+		https://raw.githubusercontent.com/Deep2106/R-3.1.3caret/CARET/DataMiningWORK/GIT_GCAC_CODES/GIT/uplod/caretEnsemble_1.0.0.tar.gz
+	</action>
+	<action type="shell_command">R CMD INSTALL caretEnsemble_1.0.0.tar.gz</action>
+	<action type="download_file" sha256sum="4834e18805b4b1e720d51c8cc04f471b054bd769dbf16ef7283f33952b11e2be">
+		https://raw.githubusercontent.com/Deep2106/R-3.1.3caret/CARET/RRF_1.6.tar.gz
+	</action>
+	<action type="shell_command">R CMD INSTALL RRF_1.6.tar.gz</action>                   
+	<action type="download_file" sha256sum="0e5d77abae12bc50639d34354f96a8e079408c9d7138a360743b73bd7bce6c1f">
+		https://raw.githubusercontent.com/Deep2106/R-3.1.3caret/CARET/nnls_1.4.tar.gz
+	</action>
+	<action type="shell_command">R CMD INSTALL nnls_1.4.tar.gz</action>
+	<action type="download_file" sha256sum="d6a3ba333c21af859cf6176da660b74daf74f225d0fd7911bd49ba7fde3661e7">
+		https://raw.githubusercontent.com/Deep2106/R-3.1.3caret/CARET/mboost_2.4-0.tar.gz
+	</action>
+	<action type="shell_command">R CMD INSTALL mboost_2.4-0.tar.gz</action>
+
+      </actions>
+     </install>
+
+     <readme>caret tools installed successfully.</readme>
+
+   </package>
+</tool_dependency>