Mercurial > repos > anmoljh > package_trinityrnaseq_r20140717
comparison tool_dependencies.xml @ 8:22e5aa74fc50
fixing -lcurses/-lncurses errors
| author | 'Anmol J. Hemrom' <anmol.jh@gmail.com> |
|---|---|
| date | Thu, 03 Sep 2015 15:41:56 +0100 |
| parents | 484a0e253167 |
| children | e1a35a46c53d |
comparison
equal
deleted
inserted
replaced
| 7:484a0e253167 | 8:22e5aa74fc50 |
|---|---|
| 16 </repository> | 16 </repository> |
| 17 <repository changeset_revision="63a4a902cda2" name="package_zlib_1_2_8" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu"> | 17 <repository changeset_revision="63a4a902cda2" name="package_zlib_1_2_8" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu"> |
| 18 <package name="zlib" version="1.2.8" /> | 18 <package name="zlib" version="1.2.8" /> |
| 19 </repository> | 19 </repository> |
| 20 </action> | 20 </action> |
| 21 <action type="shell_command">sed -i.bak -e 's/TARGETS=jellyfish rsem transdecoder others/TARGETS=jellyfish transdecoder others/' trinity-plugins/Makefile</action> | 21 <action type="shell_command">sed -i.bak -e '/tar -zxvf ${RSEM_CODE}.tar.gz/a \\tsed -e "s/-lcurses/-lncurses/" ./tmp.rsem/sam/Makefile' trinity-plugins/Makefile</action> |
| 22 <action type="shell_command">make</action> | 22 <action type="shell_command">make</action> |
| 23 <action type="move_directory_files"> | 23 <action type="move_directory_files"> |
| 24 <source_directory>.</source_directory> | 24 <source_directory>.</source_directory> |
| 25 <destination_directory>$INSTALL_DIR</destination_directory> | 25 <destination_directory>$INSTALL_DIR</destination_directory> |
| 26 </action> | 26 </action> |