Mercurial > repos > anmoljh > redundant_entries_remove
changeset 0:dee6d2dd558c draft
planemo upload commit a1f4dd8eb560c649391ada1a6bb9505893a35272
| author | anmoljh |
|---|---|
| date | Thu, 31 May 2018 11:28:57 -0400 |
| parents | |
| children | 6fd1efe69a78 |
| files | remove_redundant_entries.R remove_redundant_entries.xml tool_dependencies.xml |
| diffstat | 3 files changed, 43 insertions(+), 0 deletions(-) [+] |
line wrap: on
line diff
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/remove_redundant_entries.R Thu May 31 11:28:57 2018 -0400 @@ -0,0 +1,11 @@ +args <- commandArgs(TRUE) + + +res1 <- read.csv(args[1]) +#res11 <- duplicated(res1[,1:length(res1) - 1]) +res11 <- duplicated(res1[,1]) +result <- res1[!res11,] +names1 <- result[,1] +rownames(result) <- names1 +result$Name <- NULL +write.csv(result,file=args[2])
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/remove_redundant_entries.xml Thu May 31 11:28:57 2018 -0400 @@ -0,0 +1,26 @@ +<tool id="remove_reduandant_entries" name="Remove Redundancy" version="1.0"> + <description>"Removes repeated entry from file"</description> + <requirements> + <requirement type="package" version="3.2.1">R</requirement> + </requirements> + <stdio> + <exit_code range="1:" /> + </stdio> + <command interpreter="Rscript">remove_redundant_entries.R $Input1 $Non_redudant_mega_file</command> + <inputs> + <param format="txt" name="Input1" type="data" label="Merged Descriptor File" help="csv format"/> + </inputs> + <outputs> + <data format="csv" name="Non_redudant_mega_file" label="Non-redundant Mega Descriptor File"/> + </outputs> + <tests> + <test> + <param name="Input1" value="merged.csv" /> + <output name="Non_redudant_mega_file" file="non_redundant.csv" compare="sim_size" delta="9000000" /> + </test> + </tests> + + <help> + run command with Descriptor file and in csv format only .output file will be in CSV format. + </help> +</tool>
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tool_dependencies.xml Thu May 31 11:28:57 2018 -0400 @@ -0,0 +1,6 @@ +<?xml version="1.0"?> +<tool_dependency> + <package name="R" version="3.2.1"> + <repository changeset_revision="d9f7d84125b7" name="package_r_3_2_1" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu/" /> + </package> +</tool_dependency>