Mercurial > repos > anmoljh > trinitystats

annotate trinityStats.xml @ 6:b1a32f4c5cc5

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
added prior_installation_required=True
author anmoljh <anmol.jh@gmail.com>
date Wed, 26 Aug 2015 15:56:54 +0100
parents 8c77dcef9e1f
children af1eaa2d06c1
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
45e1df92fcda Uploaded
anmoljh
parents:
diff changeset
1 <tool id='id_trinity_stats' name='Trinity Stats' version='1.0'>
45e1df92fcda Uploaded
anmoljh
parents:
diff changeset
2 <description></description>
45e1df92fcda Uploaded
anmoljh
parents:
diff changeset
3
45e1df92fcda Uploaded
anmoljh
parents:
diff changeset
4 <requirements>
5
8c77dcef9e1f changed tool dependency in 'trinityStats.xml'
anmoljh <anmol.jh@gmail.com>
parents: 3
diff changeset
5 <requirement type="package" version="r20140717">trinityrnaseq</requirement>
0
45e1df92fcda Uploaded
anmoljh
parents:
diff changeset
6 </requirements>
45e1df92fcda Uploaded
anmoljh
parents:
diff changeset
7
3
0a8d55375004 corrected error in path
'Anmol J. Hemrom' <anmol.jh@gmail.com>
parents: 2
diff changeset
8 <command>\$TRINITY_HOME/util/TrinityStats.pl $fastafile &gt; $statsfile 2&gt;&amp;1;</command>
0
45e1df92fcda Uploaded
anmoljh
parents:
diff changeset
9
45e1df92fcda Uploaded
anmoljh
parents:
diff changeset
10 <inputs>
45e1df92fcda Uploaded
anmoljh
parents:
diff changeset
11 <!-- Required -->
45e1df92fcda Uploaded
anmoljh
parents:
diff changeset
12
2
6b715301b126 corrected missing path
'Anmol J. Hemrom' <anmol.jh@gmail.com>
parents: 0
diff changeset
13 <param name='fastafile' type="data" format="fasta" label='Trinity Assembly' help='Trinity Assembled fasta file'/>
0
45e1df92fcda Uploaded
anmoljh
parents:
diff changeset
14
45e1df92fcda Uploaded
anmoljh
parents:
diff changeset
15 <!-- Optional -->
45e1df92fcda Uploaded
anmoljh
parents:
diff changeset
16
45e1df92fcda Uploaded
anmoljh
parents:
diff changeset
17 </inputs>
45e1df92fcda Uploaded
anmoljh
parents:
diff changeset
18
45e1df92fcda Uploaded
anmoljh
parents:
diff changeset
19 <outputs>
45e1df92fcda Uploaded
anmoljh
parents:
diff changeset
20 <data name='statsfile' format='tabular' label="${tool.name} on ${on_string}: "/>
45e1df92fcda Uploaded
anmoljh
parents:
diff changeset
21 </outputs>
45e1df92fcda Uploaded
anmoljh
parents:
diff changeset
22 </tool>