Mercurial > repos > anmoljh > trinitystats

view trinityStats.xml @ 6:b1a32f4c5cc5

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
added prior_installation_required=True
author anmoljh <anmol.jh@gmail.com>
date Wed, 26 Aug 2015 15:56:54 +0100
parents 8c77dcef9e1f
children af1eaa2d06c1
line wrap: on
line source

<tool id='id_trinity_stats' name='Trinity Stats' version='1.0'>
    <description></description>

    <requirements>
        <requirement type="package" version="r20140717">trinityrnaseq</requirement>
    </requirements>

    <command>\$TRINITY_HOME/util/TrinityStats.pl  $fastafile  &gt; $statsfile 2&gt;&amp;1;</command>

    <inputs>
	    <!-- Required -->

	    <param name='fastafile'  type="data" format="fasta" label='Trinity Assembly' help='Trinity Assembled fasta file'/>
  
	     <!-- Optional -->

    </inputs>

    <outputs>
        <data name='statsfile' format='tabular' label="${tool.name} on ${on_string}: "/>
    </outputs>
</tool>