# HG changeset patch
# User anton
# Date 1409067520 14400
# Node ID 9e50b79bc32b9211fbaf295d3aa2d0436055b10d

Uploaded

diff -r 000000000000 -r 9e50b79bc32b tool_dependencies.xml
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool_dependencies.xml	Tue Aug 26 11:38:40 2014 -0400
@@ -0,0 +1,29 @@
+<?xml version="1.0"?>
+<tool_dependency>
+    <package name="bamtools" version="2.3.0_2d7685d2ae">
+        <install version="1.0">
+            <actions_group>
+                <actions architecture="x86_64" os="linux">
+                    <action type="download_by_url">http://depot.galaxyproject.org/package/linux/x86_64/bamtools/bamtools-2.3.0_2d7685d2ae.tar.gz</action>
+                    <action type="move_directory_files">
+                        <source_directory>.</source_directory>
+                        <destination_directory>$INSTALL_DIR/bin</destination_directory>
+                    </action>       
+                </actions>                
+                <actions>
+                    <action type="move_directory_files">
+                        <source_directory>bin</source_directory>
+                        <destination_directory>$INSTALL_DIR/bin</destination_directory>
+                    </action>
+                </actions>
+                <action type="set_environment">
+                    <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
+                </action>
+            </actions_group>
+        </install>
+        <readme>
+Binary files in this package are compiled from source code version 2d7685d2ae
+This is package dependency for tools relying on bamtools toolkit developed by by Derek Barnett (https://github.com/pezmaster31/bamtools). This package is distributed as x86_64 binaries only. These binaries should work on any of our stated supported linux platforms other than RHEL/CentOS 5.
+        </readme>
+    </package>
+</tool_dependency>
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