Mercurial > repos > anton > vcfaddinfo
comparison test-data/vcfaddinfo-input1.vcf @ 0:70eb7c0b6598
Imported from capsule None
| author | anton |
|---|---|
| date | Wed, 11 Jun 2014 17:10:42 -0400 |
| parents | |
| children |
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| -1:000000000000 | 0:70eb7c0b6598 |
|---|---|
| 1 ##fileformat=VCFv4.0 | |
| 2 ##fileDate=20090805 | |
| 3 ##source=myImputationProgramV3.1 | |
| 4 ##reference=1000GenomesPilot-NCBI36 | |
| 5 ##phasing=partial | |
| 6 ##INFO=<ID=NS,Number=1,Type=Integer,Description="Number of Samples With Data"> | |
| 7 ##INFO=<ID=AN,Number=1,Type=Integer,Description="Total number of alleles in called genotypes"> | |
| 8 ##INFO=<ID=AC,Number=.,Type=Integer,Description="Allele count in genotypes, for each ALT allele, in the same order as listed"> | |
| 9 ##INFO=<ID=AF,Number=.,Type=Float,Description="Allele Frequency"> | |
| 10 ##INFO=<ID=AA,Number=1,Type=String,Description="Ancestral Allele"> | |
| 11 ##INFO=<ID=DB,Number=0,Type=Flag,Description="dbSNP membership, build 129"> | |
| 12 ##INFO=<ID=H2,Number=0,Type=Flag,Description="HapMap2 membership"> | |
| 13 ##FILTER=<ID=q10,Description="Quality below 10"> | |
| 14 ##FILTER=<ID=s50,Description="Less than 50% of samples have data"> | |
| 15 ##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype"> | |
| 16 ##FORMAT=<ID=GQ,Number=1,Type=Integer,Description="Genotype Quality"> | |
| 17 ##FORMAT=<ID=DP,Number=1,Type=Integer,Description="Read Depth"> | |
| 18 ##FORMAT=<ID=HQ,Number=2,Type=Integer,Description="Haplotype Quality"> | |
| 19 ##ALT=<ID=DEL:ME:ALU,Description="Deletion of ALU element"> | |
| 20 ##ALT=<ID=CNV,Description="Copy number variable region"> | |
| 21 #CHROM POS ID REF ALT QUAL FILTER INFO FORMAT NA00001 NA00002 NA00003 | |
| 22 20 14370 rs6054257 G A 29 PASS NS=3;AF=0.5;DB;H2 GT:GQ:HQ 0|0:48:51,51 1|0:48:51,51 1/1:43:.,. | |
| 23 20 17330 . T A 3 q10 NS=3;AF=0.017 GT:GQ:HQ 0|0:49:58,50 0|1:3:65,3 0/0:41:.,. | |
| 24 X 10 rsTest AC A,ATG 10 PASS . GT 0 0/1 0|2 |