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author anton
date Wed, 11 Jun 2014 17:10:42 -0400
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children 43b9838461a5
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<tool id="vcfaddinfo" name="VCFaddinfo:" version="0.0.1">
<requirements>
    <requirement type="package" version="586c5ae5d57a38dae6b32ea831fb1f7cfa14c9bd">vcflib</requirement>
</requirements>
  <description>Adds info fields from the second dataset which are not present in the first dataset</description>
  <command>vcfaddinfo "${input1}" "${input2}" > "${out_file1}"</command>
  <inputs>
    <param format="vcf" name="input1" type="data" label="Add INFO fields to" help="First VCF dataset"/>
    <param format="vcf" name="input2" type="data" label="using INFO fields from" help="Second VCF dataset"/>
  </inputs>
  <outputs>
    <data format="vcf" name="out_file1" />
  </outputs>
 <tests>
    <test>
      <param name="input1" value="vcfaddinfo-input1.vcf"/>
      <param name="input2" value="vcflib.vcf"/>
      <output name="out_file1" file="vcfaddinfo-test1.vcf" />
    </test>
    </tests>
<help>

Adds info fields from the second dataset which are not present in the first dataset.

-----

Vcfaddinfo is a part of VCFlib toolkit developed by Erik Garrison (https://github.com/ekg/vcflib).                                                                                                                                 


</help>
</tool>