Mercurial > repos > anton > vcfallelicprimitives
comparison vcfallelicprimitives.xml @ 1:e66cbd28cdfa
Updated to vcflib 86723982aa
| author | Anton Nekrutenko <anton@bx.psu.edu> |
|---|---|
| date | Wed, 25 Jun 2014 16:01:10 -0400 |
| parents | 239da20770dc |
| children | 971da09d28aa |
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| 0:239da20770dc | 1:e66cbd28cdfa |
|---|---|
| 1 <tool id="vcfallelicprimitives" name="VcfAllelicPrimitives:" version="0.0.1"> | 1 <tool id="vcfallelicprimitives" name="VcfAllelicPrimitives:" version="0.0.1"> |
| 2 <requirements> | 2 <requirements> |
| 3 <requirement type="package" version="586c5ae5d57a38dae6b32ea831fb1f7cfa14c9bd">vcflib</requirement> | 3 <requirement type="package" version="86723982aa">vcflib</requirement> |
| 4 </requirements> | 4 </requirements> |
| 5 <description>Split alleleic primitives (gaps or mismatches) into multiple VCF lines</description> | 5 <description>Split alleleic primitives (gaps or mismatches) into multiple VCF lines</description> |
| 6 <command>cat "${input}" | vcfallelicprimitives ${m_option} -t "${t_option}" > "${out_file1}"</command> | 6 <command>cat "${input}" | vcfallelicprimitives ${m_option} -t "${t_option}" > "${out_file1}"</command> |
| 7 <inputs> | 7 <inputs> |
| 8 <param format="vcf" name="input" type="data" label="Select VCF dataset"/> | 8 <param format="vcf" name="input" type="data" label="Select VCF dataset"/> |