Mercurial > repos > anton > vcfannotate
comparison vcfannotate.xml @ 1:044448c58323
Updated to vcflib 86723982aa
author | Anton Nekrutenko <anton@bx.psu.edu> |
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date | Wed, 25 Jun 2014 16:01:27 -0400 |
parents | 027fe0a0076e |
children | 98961914308d |
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0:027fe0a0076e | 1:044448c58323 |
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1 <tool id="vcfannotate" name="VCFannotate:" version="0.0.1"> | 1 <tool id="vcfannotate" name="VCFannotate:" version="0.0.1"> |
2 <requirements> | 2 <requirements> |
3 <requirement type="package" version="586c5ae5d57a38dae6b32ea831fb1f7cfa14c9bd">vcflib</requirement> | 3 <requirement type="package" version="86723982aa">vcflib</requirement> |
4 </requirements> | 4 </requirements> |
5 <description>Intersect VCF records with BED annotations</description> | 5 <description>Intersect VCF records with BED annotations</description> |
6 <command>vcfannotate --key "${key_option}" -b "${bed_data}" "${input}" > "${out_file1}"</command> | 6 <command>vcfannotate --key "${key_option}" -b "${bed_data}" "${input}" > "${out_file1}"</command> |
7 <inputs> | 7 <inputs> |
8 <param format="vcf" name="input" type="data" label="Select VCF dataset"/> | 8 <param format="vcf" name="input" type="data" label="Select VCF dataset"/> |