# HG changeset patch # User anton # Date 1410806932 14400 # Node ID 9baa80088ab6038195c6d14be3ba6037770c52a5 # Parent 846a4449a50a71ec1a36b97e8fa582daa2ae1df1 Uploaded diff -r 846a4449a50a -r 9baa80088ab6 tool_dependencies.xml --- a/tool_dependencies.xml Wed Jun 25 16:34:51 2014 -0400 +++ b/tool_dependencies.xml Mon Sep 15 14:48:52 2014 -0400 @@ -1,6 +1,6 @@ - - + + diff -r 846a4449a50a -r 9baa80088ab6 vcfannotategenotypes.xml --- a/vcfannotategenotypes.xml Wed Jun 25 16:34:51 2014 -0400 +++ b/vcfannotategenotypes.xml Mon Sep 15 14:48:52 2014 -0400 @@ -1,6 +1,6 @@ - vcflib + vcflib Annotate genotypes in a VCF dataset using genotypes from another VCF dataset vcfannotategenotypes "${tag_option}" "${input1}" "${input2}" > "${out_file1}" @@ -22,7 +22,7 @@ -Annotates genotypes in the **First** file with genotypes in the **Second** adding the genotype as another flag to each sample filed in the first file. **Annotation-tag** is the name of the sample flag which is added to store the annotation. also adds a 'has\_variant' flag for sites where the second file has a variant. +Annotates genotypes in the **First** dataset with genotypes from the **Second** adding the genotype as another flag to each sample filled in the first file. **Annotation-tag** is the name of the sample flag which is added to store the annotation. Also adds a 'has\_variant' flag for sites where the second file has a variant. -----