Mercurial > repos > anton > vcfcommonsamples
annotate vcfcommonsamples.xml @ 1:239ddfe40290
Updated to vcflib 86723982aa
author | Anton Nekrutenko <anton@bx.psu.edu> |
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date | Wed, 25 Jun 2014 16:13:47 -0400 |
parents | 6a1a90ea160f |
children | 4acc5abb5e8e |
rev | line source |
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0 | 1 <tool id="vcfcommonsamples" name="VCFcommonSamples:" version="0.0.1"> |
2 <requirements> | |
1
239ddfe40290
Updated to vcflib 86723982aa
Anton Nekrutenko <anton@bx.psu.edu>
parents:
0
diff
changeset
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3 <requirement type="package" version="86723982aa">vcflib</requirement> |
0 | 4 </requirements> |
5 <description>Output records belonging to samples commong between two datasets</description> | |
6 <command>vcfcommonsamples "${input1}" "${input2}" > "${out_file1}"</command> | |
7 <inputs> | |
8 <param format="vcf" name="input1" type="data" label="First dataset"/> | |
9 <param format="vcf" name="input2" type="data" label="Second dataset"/> | |
10 </inputs> | |
11 <outputs> | |
12 <data format="vcf" name="out_file1" /> | |
13 </outputs> | |
14 <tests> | |
15 <test> | |
16 <param name="input1" value="vcflib.vcf"/> | |
17 <param name="input2" value="vcfcommonsamples-test1-input2.vcf"/> | |
18 <output name="out_file1" file="vcfcommonsamples-test1.vcf"/> | |
19 </test> | |
20 </tests> | |
21 <help> | |
22 | |
23 Outputs each record in the first file, removing samples not present in the second. | |
24 | |
25 ---- | |
26 | |
27 Vcfcommonsamples is a part of VCFlib toolkit developed by Erik Garrison (https://github.com/ekg/vcflib). | |
28 | |
29 </help> | |
30 </tool> |