# HG changeset patch # User anton # Date 1410807083 14400 # Node ID 4342273027290e13ec2861fb47d81e96dd3220b6 # Parent 9f0d84b2deba150ea5c37cdcc16ead17f7989499 Uploaded diff -r 9f0d84b2deba -r 434227302729 tool_dependencies.xml --- a/tool_dependencies.xml Wed Jun 25 16:48:10 2014 -0400 +++ b/tool_dependencies.xml Mon Sep 15 14:51:23 2014 -0400 @@ -1,6 +1,6 @@ - - + + diff -r 9f0d84b2deba -r 434227302729 vcffixup.xml --- a/vcffixup.xml Wed Jun 25 16:48:10 2014 -0400 +++ b/vcffixup.xml Mon Sep 15 14:51:23 2014 -0400 @@ -1,6 +1,6 @@ - vcflib + vcflib Count the allele frequencies across alleles present in each record in the VCF file vcffixup "${input1}" > "${out_file1}" @@ -18,7 +18,7 @@ -Uses genotypes from the VCF file to correct AC (alternate allele count), AF (alternate allele frequency), NS (number of called), in the VCF records. +Uses genotypes from the selected VCF dataset to correct AC (alternate allele count), AF (alternate allele frequency), NS (number of called), in the VCF records. ----