# HG changeset patch # User anton # Date 1410807194 14400 # Node ID f3243301d74fdd3f2011b471b153ae819c107faa # Parent 47dd84123b42af66f053bce498efba8ca23022a7 Uploaded diff -r 47dd84123b42 -r f3243301d74f tool_dependencies.xml --- a/tool_dependencies.xml Wed Jun 25 16:50:33 2014 -0400 +++ b/tool_dependencies.xml Mon Sep 15 14:53:14 2014 -0400 @@ -1,6 +1,6 @@ - - + + diff -r 47dd84123b42 -r f3243301d74f vcfprimers.xml --- a/vcfprimers.xml Wed Jun 25 16:50:33 2014 -0400 +++ b/vcfprimers.xml Mon Sep 15 14:53:14 2014 -0400 @@ -1,6 +1,6 @@ - vcflib + vcflib Extract flanking sequences for each VCF record @@ -49,7 +49,7 @@ -For each VCF record, extract the flanking sequences, and write them to stdout as FASTA +For each VCF record, extract the flanking sequences, and write them as FASTA records suitable for alignment. This tool is intended for use in designing validation experiments. Primers extracted which would flank all of the alleles at multi-allelic sites. The name of the FASTA "reads" indicates the VCF record which they apply to.