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comparison vcfrandomsample.xml @ 3:e7ce0d1fe6f5 draft default tip

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author anton
date Mon, 15 Sep 2014 14:53:34 -0400
parents 9c03ddb3ba52
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2:9c03ddb3ba52 3:e7ce0d1fe6f5
1 <tool id="vcfrandomsample" name="VCFrandomSample:" version="0.0.2"> 1 <tool id="vcfrandomsample" name="VCFrandomSample:" version="0.0.2">
2 <requirements> 2 <requirements>
3 <requirement type="package" version="86723982aa">vcflib</requirement> 3 <requirement type="package" version="8a5602bf07">vcflib</requirement>
4 </requirements> 4 </requirements>
5 <description>Randomly sample sites from VCF dataset</description> 5 <description>Randomly sample sites from VCF dataset</description>
6 <command> 6 <command>
7 7
8 #if $adv_options.adv_options_selector == True: 8 #if $adv_options.adv_options_selector == True:
34 <output name="out_file1" file="vcfrandomsample-test1.vcf" lines_diff="2" /> 34 <output name="out_file1" file="vcfrandomsample-test1.vcf" lines_diff="2" />
35 </test> 35 </test>
36 </tests> 36 </tests>
37 <help> 37 <help>
38 38
39 Randomly sample sites from an input VCF file. Scale the sampling probability by the field specified by --scale-by (see advanced controls). This may be 39 Randomly sample sites from an input VCF dataset. Scale the sampling probability by the field specified by --scale-by (see advanced controls). This may be
40 used to provide uniform sampling across allele frequencies, for instance (AF field in this case). 40 used to provide uniform sampling across allele frequencies, for instance (AF field in this case).
41 41
42 Options:: 42 Options::
43 43
44 -r, --rate RATE base sampling probability per locus 44 -r, --rate RATE base sampling probability per locus