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comparison vcfselectsamples.xml @ 2:ca345cfe7119

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Updated tool version to 0.0.2
author Anton Nekrutenko <anton@bx.psu.edu>
date Wed, 25 Jun 2014 16:51:13 -0400
parents d1ede06c0b29
children acad111c2466
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1:d1ede06c0b29 2:ca345cfe7119
1 <tool id="vcfselectsamples" name="VCFselectsamples:" version="0.0.1"> 1 <tool id="vcfselectsamples" name="VCFselectsamples:" version="0.0.2">
2 <requirements> 2 <requirements>
3 <requirement type="package" version="86723982aa">vcflib</requirement> 3 <requirement type="package" version="86723982aa">vcflib</requirement>
4 </requirements> 4 </requirements>
5 <description>Select samples from a VCF dataset</description> 5 <description>Select samples from a VCF dataset</description>
6 <command>vcfkeepsamples "${input1}" ${ ' '.join( map( lambda x:'"%s"' % ( x ), str($vcf_samples ).split(",") ) ) } > "${out_file1}"</command> 6 <command>vcfkeepsamples "${input1}" ${ ' '.join( map( lambda x:'"%s"' % ( x ), str($vcf_samples ).split(",") ) ) } > "${out_file1}"</command>