Mercurial > repos > anton > vcfselectsamples
comparison vcfselectsamples.xml @ 1:d1ede06c0b29
Updated to vcflib 86723982aa
author | Anton Nekrutenko <anton@bx.psu.edu> |
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date | Wed, 25 Jun 2014 16:18:09 -0400 |
parents | 41f097b3d55a |
children | ca345cfe7119 |
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0:41f097b3d55a | 1:d1ede06c0b29 |
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1 <tool id="vcfselectsamples" name="VCFselectsamples:" version="0.0.1"> | 1 <tool id="vcfselectsamples" name="VCFselectsamples:" version="0.0.1"> |
2 <requirements> | 2 <requirements> |
3 <requirement type="package" version="586c5ae5d57a38dae6b32ea831fb1f7cfa14c9bd">vcflib</requirement> | 3 <requirement type="package" version="86723982aa">vcflib</requirement> |
4 </requirements> | 4 </requirements> |
5 <description>Select samples from a VCF dataset</description> | 5 <description>Select samples from a VCF dataset</description> |
6 <command>vcfkeepsamples "${input1}" ${ ' '.join( map( lambda x:'"%s"' % ( x ), str($vcf_samples ).split(",") ) ) } > "${out_file1}"</command> | 6 <command>vcfkeepsamples "${input1}" ${ ' '.join( map( lambda x:'"%s"' % ( x ), str($vcf_samples ).split(",") ) ) } > "${out_file1}"</command> |
7 <inputs> | 7 <inputs> |
8 <param format="vcf" name="input1" type="data" label="Select VCF dataset" /> | 8 <param format="vcf" name="input1" type="data" label="Select VCF dataset" /> |