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comparison vcfselectsamples.xml @ 1:d1ede06c0b29

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Updated to vcflib 86723982aa
author Anton Nekrutenko <anton@bx.psu.edu>
date Wed, 25 Jun 2014 16:18:09 -0400
parents 41f097b3d55a
children ca345cfe7119
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0:41f097b3d55a 1:d1ede06c0b29
1 <tool id="vcfselectsamples" name="VCFselectsamples:" version="0.0.1"> 1 <tool id="vcfselectsamples" name="VCFselectsamples:" version="0.0.1">
2 <requirements> 2 <requirements>
3 <requirement type="package" version="586c5ae5d57a38dae6b32ea831fb1f7cfa14c9bd">vcflib</requirement> 3 <requirement type="package" version="86723982aa">vcflib</requirement>
4 </requirements> 4 </requirements>
5 <description>Select samples from a VCF dataset</description> 5 <description>Select samples from a VCF dataset</description>
6 <command>vcfkeepsamples "${input1}" ${ ' '.join( map( lambda x:'"%s"' % ( x ), str($vcf_samples ).split(",") ) ) } > "${out_file1}"</command> 6 <command>vcfkeepsamples "${input1}" ${ ' '.join( map( lambda x:'"%s"' % ( x ), str($vcf_samples ).split(",") ) ) } > "${out_file1}"</command>
7 <inputs> 7 <inputs>
8 <param format="vcf" name="input1" type="data" label="Select VCF dataset" /> 8 <param format="vcf" name="input1" type="data" label="Select VCF dataset" />