Mercurial > repos > anton > vcfselectsamples
comparison vcfselectsamples.xml @ 3:acad111c2466 draft default tip
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author | anton |
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date | Mon, 15 Sep 2014 14:53:50 -0400 |
parents | ca345cfe7119 |
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2:ca345cfe7119 | 3:acad111c2466 |
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1 <tool id="vcfselectsamples" name="VCFselectsamples:" version="0.0.2"> | 1 <tool id="vcfselectsamples" name="VCFselectsamples:" version="0.0.2"> |
2 <requirements> | 2 <requirements> |
3 <requirement type="package" version="86723982aa">vcflib</requirement> | 3 <requirement type="package" version="8a5602bf07">vcflib</requirement> |
4 </requirements> | 4 </requirements> |
5 <description>Select samples from a VCF dataset</description> | 5 <description>Select samples from a VCF dataset</description> |
6 <command>vcfkeepsamples "${input1}" ${ ' '.join( map( lambda x:'"%s"' % ( x ), str($vcf_samples ).split(",") ) ) } > "${out_file1}"</command> | 6 <command>vcfkeepsamples "${input1}" ${ ' '.join( map( lambda x:'"%s"' % ( x ), str($vcf_samples ).split(",") ) ) } > "${out_file1}"</command> |
7 <inputs> | 7 <inputs> |
8 <param format="vcf" name="input1" type="data" label="Select VCF dataset" /> | 8 <param format="vcf" name="input1" type="data" label="Select VCF dataset" /> |