comparison changespacetounderscore_readname.py @ 0:70f8259b0b30 draft

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author arkarachai-fungtammasan
date Wed, 01 Apr 2015 16:48:58 -0400
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-1:000000000000 0:70f8259b0b30
1 import sys
2 fd=open(sys.argv[1])
3 output=open(sys.argv[2],'w')
4 columntochange=int(sys.argv[3])-1 # default is 6-1=5
5 lines=fd.xreadlines()
6 for line in lines:
7 temp=line.strip().split('\t')
8 temp=filter(None,temp)
9 temp2=temp[columntochange].replace(' ','_')
10 product=temp[:columntochange]
11 product.append(temp2)
12 product.extend(temp[columntochange+1:])
13 output.writelines('\t'.join(product)+'\n')
14 fd.close()
15 output.close()