Mercurial > repos > arkarachai-fungtammasan > microsatellite_ngs

comparison test-data/test-data/samplesortedPESAM_C.sam @ 4:ecfc9041bcc5

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author arkarachai-fungtammasan
date Wed, 01 Apr 2015 14:05:54 -0400
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comparison
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3:7cc220e8c2ac 4:ecfc9041bcc5
1 M01368:22:000000000-A4T24:1:1101:10010:3775_1:N:0:2_1_per1_1 113 shifted 720 37 40M = 541 -46 TTCGTGCACACAGCCCAGCTTGGAGCGAACGACCTACACC HHFG@IIHHHHHIHHFHHGFGGGGDBDDEDDDBBB????? XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:40
2 M01368:22:000000000-A4T24:1:1101:10010:3775_1:N:0:2_1_per1_1 177 shifted 541 37 173M = 720 46 CTTCTAGTGTAGCCGTAGTTAGGCCACCACTTCAAGAACTCTGTAGCACCGCCTACATACCTCGCTCTGCTAATCCTGTTACCAGTGGCTGCTGCCAGTGGCGATAAGTCGTGTCTTACCGGGTTGGACTCAAGACGATAGTTACCGGATAAGGCGCAGCGGTCGGGCTGAAC ::GECC:*:)D<GEGGGECCCEC?00E?::CCCCEEECC:C*GEC4'.>ACGGEC:CC?>><DCE?C:EC?GECE?:CCECGEEC*GEECEC:GEEGE?GGECC:ECA2CC*CCC8DEGGEGC=CGECEAEGEEDGGEDEGD=EBGGGFDHHHHHHHHEEHHHHHIIHFIIHH XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:173
3 M01368:22:000000000-A4T24:1:1101:10015:2849_1:N:0:2_1_per1_2 113 shifted 4089 37 170M = 4008 -176 GCACAACATGGGGGATCATGTAACTCGCCTTGATCGTTGGGAACCGGAGCTGAATGAAGCCATACCAAACGACGAGCGTGACACCACGATGCCTGTAGCAATGGCAACAACGTTGCGCAAACTATTAACTGGCGAACTACTTACTCTAGCTTCCCGGCAACAATTAATAG GECGGGGGGGGGGGGEGEGGGGD>2GEGGGGGEEGGGGGGGGGGGGGEEECEGEAGGEEGEB>=GGFGEAGHHHEHHHFHFF?ED;HFIHHIIIIHIIHHHHIHHHHIHHHHHHHHIIIIHIHHHHIHHHHHIIHHIIHHIIHIIIIIGGGGGGDDDDDDDDBBB????< XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:170
4 M01368:22:000000000-A4T24:1:1101:10015:2849_1:N:0:2_1_per1_2 177 shifted 4008 37 75M = 4089 176 TGCCATAACCATGAGTGATAACACTGCGGCCAACTTACTTCTGACAACGATCGGAGGACCGAAGGAGCTAACCGC CEGGEEEECC?:EEGECGGGGECGGGGEEGGEEGCCGEGGGGGGGGGGDGGGGGE>EEGGGGGGGGGGGAGGGGE XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:75
5 M01368:22:000000000-A4T24:1:1101:10070:4955_1:N:0:2_1_per1_1 129 shifted 1937 37 164M = 1850 -87 TCAGATAGGGGTCCCTTGACCACCATCCTCCGTGAAATCAATATCCCGCACAAGAGTGCTACTCTCCTCGCTCCGGGCCCATAACACTTGGGGGTAGCTAAAGTGAACTGTATCCGACATCTGGTTCCTACTTCAGGGCCATAAAGCCTAAATAGCCCACACGT HHHHIHHHHHHHHHHHHHHHHHHHHHGGFGGGGGGGHGGGGGGGGGGGGEGGGGGGAEEGGGEGGGGGGEGEEGGGGGGGGGGGGGGGGGGGGGGGGGGGGGECGGGGGGGGGGGGGGAGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGEGGGCEGEGG XT:A:U NM:i:1 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:138T25
6 M01368:22:000000000-A4T24:1:1101:10070:4955_1:N:0:2_1_per1_1 65 shifted 1850 37 81M = 1937 87 CCCTTAACAGTACATAGTACATAAAGCCATTTACCGTACATAGCACATTACAGTCAAATCCCTTCTCGTCCCCATGGATGA ?????BBBEEDBBDDDGGGGGGIIIIIIIIIIIIIHHHHHIIIIIIIIIIIIIIIIIIIIIIIIIIIHIHHHIIIIIIHGH XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:81
7 M01368:22:000000000-A4T24:1:1101:10070:4955_1:N:0:2_1_per1_2 129 shifted 2031 37 70M = 1850 -181 TAGCTAAAGTGAACTGTATCCGACATCTGGTTCCTACTTCAGGGCCATAAAGCCTAAATAGCCCACACGT GGGGGGGGECGGGGGGGGGGGGGGAGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGEGGGCEGEGG XT:A:U NM:i:1 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:44T25
8 M01368:22:000000000-A4T24:1:1101:10070:4955_1:N:0:2_1_per1_2 65 shifted 1850 37 176M = 2031 181 CCCTTAACAGTACATAGTACATAAAGCCATTTACCGTACATAGCACATTACAGTCAAATCCCTTCTCGTCCCCATGGATGACCCCCCTCAGATAGGGGTCCCTTGACCACCATCCTCCGTGAAATCAATATCCCGCACAAGAGTGCTACTCTCCTCGCTCCGGGCCCATAACACTT ?????BBBEEDBBDDDGGGGGGIIIIIIIIIIIIIHHHHHIIIIIIIIIIIIIIIIIIIIIIIIIIIHIHHHIIIIIIHGHIIIHHHHHHHIHHHHHHHHHHHHHHHHHHHHHGGFGGGGGGGHGGGGGGGGGGGGEGGGGGGAEEGGGEGGGGGGEGEEGGGGGGGGGGGGGGGG XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:176
9 M01368:22:000000000-A4T24:1:1101:10126:5433_1:N:0:2_1_per1_1 129 shifted 1523 37 21M = 1429 -94 GTCTTTAACTCCACCATTAGC GGGEGGEGGGGGCGGGGGEGG XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:21
10 M01368:22:000000000-A4T24:1:1101:10126:5433_1:N:0:2_1_per1_1 65 shifted 1429 37 89M = 1523 94 CTATGCATCCAACGCGTTGGGAGCTCTCCCATATGGTCGACCTGCAGGCGGCCGCGAATTCACTAGTGATTTCCAAGGACAAATCAGAG ?????BBBDDDDDDDDGGGFGGFEHIIIIIIIHIIIHIHHHHHIIHFHHHHHHHHHHHHHHHHHHHHGGGGGGGGGGGGGGGGGGEGEE XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:89