Mercurial > repos > arkarachai-fungtammasan > microsatellite_ngs
diff Galaxy-Workflow-microsatellite_profiling.ga @ 7:3c05abb4452e default tip
add missing files
author | devteam@galaxyproject.org |
---|---|
date | Wed, 22 Apr 2015 12:22:50 -0400 |
parents | |
children |
line wrap: on
line diff
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/Galaxy-Workflow-microsatellite_profiling.ga Wed Apr 22 12:22:50 2015 -0400 @@ -0,0 +1,764 @@ +{ + "a_galaxy_workflow": "true", + "annotation": "Profile length of microsatellites or short tandem repeats from short read data", + "format-version": "0.1", + "name": "microsatellite_profiling", + "steps": { + "0": { + "annotation": "input raw read that you want to detect Tandem reepats (TRs)/microsatellites", + "id": 0, + "input_connections": {}, + "inputs": [ + { + "description": "input raw read that you want to detect Tandem reepats (TRs)/microsatellites", + "name": "single end fastq" + } + ], + "name": "Input dataset", + "outputs": [], + "position": { + "left": 200, + "top": 274.765625 + }, + "tool_errors": null, + "tool_id": null, + "tool_state": "{\"name\": \"single end fastq\"}", + "tool_version": null, + "type": "data_input", + "user_outputs": [] + }, + "1": { + "annotation": "need to be prepared by user using TR genome profiling", + "id": 1, + "input_connections": {}, + "inputs": [ + { + "description": "need to be prepared by user using TR genome profiling", + "name": "TR in genome" + } + ], + "name": "Input dataset", + "outputs": [], + "position": { + "left": 177, + "top": 412.953125 + }, + "tool_errors": null, + "tool_id": null, + "tool_state": "{\"name\": \"TR in genome\"}", + "tool_version": null, + "type": "data_input", + "user_outputs": [] + }, + "2": { + "annotation": "https://usegalaxy.org/u/guru%40psu.edu/h/error-rates-files", + "id": 2, + "input_connections": {}, + "inputs": [ + { + "description": "https://usegalaxy.org/u/guru%40psu.edu/h/error-rates-files", + "name": "error rate file" + } + ], + "name": "Input dataset", + "outputs": [], + "position": { + "left": 1412.875, + "top": 384.671875 + }, + "tool_errors": null, + "tool_id": null, + "tool_state": "{\"name\": \"error rate file\"}", + "tool_version": null, + "type": "data_input", + "user_outputs": [] + }, + "3": { + "annotation": "", + "id": 3, + "input_connections": { + "filePath": { + "id": 0, + "output_name": "output" + } + }, + "inputs": [], + "name": "Microsatellite detection", + "outputs": [ + { + "name": "stdout", + "type": "tabular" + } + ], + "position": { + "left": 441.953125, + "top": 252 + }, + "post_job_actions": { + "ChangeDatatypeActionstdout": { + "action_arguments": { + "newtype": "tabular" + }, + "action_type": "ChangeDatatypeAction", + "output_name": "stdout" + }, + "RenameDatasetActionstdout": { + "action_arguments": { + "newname": "TR in raw reads" + }, + "action_type": "RenameDatasetAction", + "output_name": "stdout" + } + }, + "tool_errors": null, + "tool_id": "toolshed.g2.bx.psu.edu/repos/arkarachai-fungtammasan/microsatellite_ngs/microsatellite/1.0.0", + "tool_state": "{\"__page__\": 0, \"flankSetting\": \"{\\\"noflankdisplay\\\": \\\"True\\\", \\\"__current_case__\\\": 1}\", \"filePath\": \"null\", \"minlength\": \"\\\"5\\\"\", \"hammingThreshold\": \"\\\"0\\\"\", \"period\": \"\\\"1\\\"\", \"surfix\": \"\\\"20\\\"\", \"prefix\": \"\\\"20\\\"\", \"__rerun_remap_job_id__\": null, \"inputFileSource\": \"{\\\"inputFileType\\\": \\\"fastq\\\", \\\"__current_case__\\\": 3}\", \"partialmotifs\": \"\\\"True\\\"\", \"multipleruns\": \"\\\"True\\\"\"}", + "tool_version": "1.0.0", + "type": "tool", + "user_outputs": [] + }, + "4": { + "annotation": "", + "id": 4, + "input_connections": { + "input": { + "id": 3, + "output_name": "stdout" + } + }, + "inputs": [], + "name": "Read name modifier", + "outputs": [ + { + "name": "output", + "type": "tabular" + } + ], + "position": { + "left": 418.484375, + "top": 385.03125 + }, + "post_job_actions": {}, + "tool_errors": null, + "tool_id": "toolshed.g2.bx.psu.edu/repos/arkarachai-fungtammasan/microsatellite_ngs/space2underscore_readname/1.0.0", + "tool_state": "{\"__page__\": 0, \"column_n\": \"\\\"6\\\"\", \"__rerun_remap_job_id__\": null, \"input\": \"null\"}", + "tool_version": "1.0.0", + "type": "tool", + "user_outputs": [] + }, + "5": { + "annotation": "", + "id": 5, + "input_connections": { + "microsat_in_read": { + "id": 4, + "output_name": "output" + } + }, + "inputs": [], + "name": "Fetch flanking bases", + "outputs": [ + { + "name": "Leftflanking", + "type": "fastq" + }, + { + "name": "Rightflanking", + "type": "fastq" + } + ], + "position": { + "left": 390.9375, + "top": 509.046875 + }, + "post_job_actions": { + "ChangeDatatypeActionLeftflanking": { + "action_arguments": { + "newtype": "fastqsanger" + }, + "action_type": "ChangeDatatypeAction", + "output_name": "Leftflanking" + }, + "ChangeDatatypeActionRightflanking": { + "action_arguments": { + "newtype": "fastqsanger" + }, + "action_type": "ChangeDatatypeAction", + "output_name": "Rightflanking" + }, + "HideDatasetActionLeftflanking": { + "action_arguments": {}, + "action_type": "HideDatasetAction", + "output_name": "Leftflanking" + }, + "HideDatasetActionRightflanking": { + "action_arguments": {}, + "action_type": "HideDatasetAction", + "output_name": "Rightflanking" + } + }, + "tool_errors": null, + "tool_id": "toolshed.g2.bx.psu.edu/repos/arkarachai-fungtammasan/microsatellite_ngs/fetchflank/1.0.0", + "tool_state": "{\"qualitycutoff\": \"\\\"20\\\"\", \"lengthofbasetocheckquality\": \"\\\"20\\\"\", \"__rerun_remap_job_id__\": null, \"microsat_in_read\": \"null\", \"__page__\": 0}", + "tool_version": "1.0.0", + "type": "tool", + "user_outputs": [] + }, + "6": { + "annotation": "this tool has problems with parameter setting when you run it from pipeline. If you want different parameter, it's recommend that you clone pipleline and modify it.", + "id": 6, + "input_connections": { + "paired|input1": { + "id": 5, + "output_name": "Leftflanking" + }, + "paired|input2": { + "id": 5, + "output_name": "Rightflanking" + } + }, + "inputs": [], + "name": "Map with BWA for Illumina", + "outputs": [ + { + "name": "output", + "type": "sam" + } + ], + "position": { + "left": 403, + "top": 686 + }, + "post_job_actions": { + "HideDatasetActionoutput": { + "action_arguments": {}, + "action_type": "HideDatasetAction", + "output_name": "output" + } + }, + "tool_errors": null, + "tool_id": "toolshed.g2.bx.psu.edu/repos/devteam/bwa_wrappers/bwa_wrapper/1.2.3", + "tool_state": "{\"genomeSource\": \"{\\\"refGenomeSource\\\": \\\"history\\\", \\\"ownFile\\\": null, \\\"__current_case__\\\": 1}\", \"__page__\": 0, \"__rerun_remap_job_id__\": null, \"paired\": \"{\\\"input2\\\": null, \\\"sPaired\\\": \\\"paired\\\", \\\"input1\\\": null, \\\"__current_case__\\\": 1}\", \"params\": \"{\\\"outputTopN\\\": \\\"3\\\", \\\"suboptAlign\\\": \\\"\\\", \\\"gapOpenPenalty\\\": \\\"11\\\", \\\"maxGapOpens\\\": \\\"1\\\", \\\"mismatchPenalty\\\": \\\"3\\\", \\\"fracMissingAligns\\\": \\\"0.04\\\", \\\"disallowIndel\\\": \\\"5\\\", \\\"outputTopNDisc\\\": \\\"10\\\", \\\"disallowLongDel\\\": \\\"16\\\", \\\"readGroup\\\": {\\\"__current_case__\\\": 1, \\\"specReadGroup\\\": \\\"no\\\"}, \\\"maxInsertSize\\\": \\\"500\\\", \\\"__current_case__\\\": 1, \\\"maxEditDist\\\": \\\"0\\\", \\\"gapExtensPenalty\\\": \\\"4\\\", \\\"maxGapExtens\\\": \\\"-1\\\", \\\"maxEditDistSeed\\\": \\\"2\\\", \\\"noIterSearch\\\": \\\"False\\\", \\\"seed\\\": \\\"-1\\\", \\\"maxOccurPairing\\\": \\\"100000\\\", \\\"source_select\\\": \\\"full\\\"}\", \"suppressHeader\": \"\\\"False\\\"\"}", + "tool_version": "1.2.3", + "type": "tool", + "user_outputs": [] + }, + "7": { + "annotation": "", + "id": 7, + "input_connections": { + "input1": { + "id": 6, + "output_name": "output" + } + }, + "inputs": [], + "name": "Filter SAM", + "outputs": [ + { + "name": "out_file1", + "type": "sam" + } + ], + "position": { + "left": 778, + "top": 489.953125 + }, + "post_job_actions": { + "HideDatasetActionout_file1": { + "action_arguments": {}, + "action_type": "HideDatasetAction", + "output_name": "out_file1" + } + }, + "tool_errors": null, + "tool_id": "toolshed.g2.bx.psu.edu/repos/devteam/sam_bitwise_flag_filter/sam_bw_filter/1.0.0", + "tool_state": "{\"__page__\": 0, \"__rerun_remap_job_id__\": null, \"input1\": \"null\", \"bits\": \"[{\\\"states\\\": \\\"0\\\", \\\"__index__\\\": 0, \\\"flags\\\": \\\"--0x0004\\\"}]\"}", + "tool_version": "1.0.0", + "type": "tool", + "user_outputs": [] + }, + "8": { + "annotation": "remove all mapped read with soft mask", + "id": 8, + "input_connections": { + "input": { + "id": 7, + "output_name": "out_file1" + } + }, + "inputs": [], + "name": "Filter", + "outputs": [ + { + "name": "out_file1", + "type": "input" + } + ], + "position": { + "left": 781.5, + "top": 602 + }, + "post_job_actions": { + "HideDatasetActionout_file1": { + "action_arguments": {}, + "action_type": "HideDatasetAction", + "output_name": "out_file1" + } + }, + "tool_errors": null, + "tool_id": "Filter1", + "tool_state": "{\"input\": \"null\", \"__rerun_remap_job_id__\": null, \"header_lines\": \"\\\"0\\\"\", \"cond\": \"\\\"c6.count('S')==0\\\"\", \"__page__\": 0}", + "tool_version": "1.1.0", + "type": "tool", + "user_outputs": [] + }, + "9": { + "annotation": "", + "id": 9, + "input_connections": { + "input": { + "id": 8, + "output_name": "out_file1" + } + }, + "inputs": [], + "name": "Sort", + "outputs": [ + { + "name": "out_file1", + "type": "input" + } + ], + "position": { + "left": 777.5, + "top": 739 + }, + "post_job_actions": { + "HideDatasetActionout_file1": { + "action_arguments": {}, + "action_type": "HideDatasetAction", + "output_name": "out_file1" + } + }, + "tool_errors": null, + "tool_id": "sort1", + "tool_state": "{\"__page__\": 0, \"style\": \"\\\"alpha\\\"\", \"column\": \"{\\\"__class__\\\": \\\"UnvalidatedValue\\\", \\\"value\\\": \\\"1\\\"}\", \"__rerun_remap_job_id__\": null, \"order\": \"\\\"ASC\\\"\", \"input\": \"null\", \"column_set\": \"[]\"}", + "tool_version": "1.0.3", + "type": "tool", + "user_outputs": [] + }, + "10": { + "annotation": "", + "id": 10, + "input_connections": { + "flankedbasesSAM": { + "id": 9, + "output_name": "out_file1" + } + }, + "inputs": [], + "name": "Combine mapped flaked bases", + "outputs": [ + { + "name": "output", + "type": "tabular" + } + ], + "position": { + "left": 723.328125, + "top": 887.828125 + }, + "post_job_actions": { + "HideDatasetActionoutput": { + "action_arguments": {}, + "action_type": "HideDatasetAction", + "output_name": "output" + } + }, + "tool_errors": null, + "tool_id": "toolshed.g2.bx.psu.edu/repos/arkarachai-fungtammasan/microsatellite_ngs/PEsortedSAM2readprofile/1.0.0", + "tool_state": "{\"__page__\": 0, \"__rerun_remap_job_id__\": null, \"maxoriginalreadlength\": \"\\\"101\\\"\", \"maxTRlength\": \"\\\"100\\\"\", \"flankedbasesSAM\": \"null\", \"twobitref\": \"null\"}", + "tool_version": "1.0.0", + "type": "tool", + "user_outputs": [] + }, + "11": { + "annotation": "", + "id": 11, + "input_connections": { + "input1": { + "id": 4, + "output_name": "output" + }, + "input2": { + "id": 10, + "output_name": "output" + } + }, + "inputs": [], + "name": "Join two Datasets", + "outputs": [ + { + "name": "out_file1", + "type": "input" + } + ], + "position": { + "left": 1116.375, + "top": 431.84375 + }, + "post_job_actions": { + "ColumnSetActionout_file1": { + "action_arguments": { + "chromCol": "10", + "endCol": "14", + "nameCol": "", + "startCol": "13", + "strandCol": "" + }, + "action_type": "ColumnSetAction", + "output_name": "out_file1" + }, + "HideDatasetActionout_file1": { + "action_arguments": {}, + "action_type": "HideDatasetAction", + "output_name": "out_file1" + } + }, + "tool_errors": null, + "tool_id": "join1", + "tool_state": "{\"input2\": \"null\", \"__page__\": 0, \"field1\": \"{\\\"__class__\\\": \\\"UnvalidatedValue\\\", \\\"value\\\": \\\"6\\\"}\", \"partial\": \"\\\"\\\"\", \"field2\": \"{\\\"__class__\\\": \\\"UnvalidatedValue\\\", \\\"value\\\": \\\"1\\\"}\", \"__rerun_remap_job_id__\": null, \"fill_empty_columns\": \"{\\\"fill_empty_columns_switch\\\": \\\"no_fill\\\", \\\"__current_case__\\\": 0}\", \"unmatched\": \"\\\"\\\"\", \"input1\": \"null\"}", + "tool_version": "2.0.2", + "type": "tool", + "user_outputs": [] + }, + "12": { + "annotation": "", + "id": 12, + "input_connections": { + "input1": { + "id": 1, + "output_name": "output" + }, + "input2": { + "id": 11, + "output_name": "out_file1" + } + }, + "inputs": [], + "name": "Join", + "outputs": [ + { + "name": "output", + "type": "interval" + } + ], + "position": { + "left": 1113.96875, + "top": 560.296875 + }, + "post_job_actions": { + "HideDatasetActionoutput": { + "action_arguments": {}, + "action_type": "HideDatasetAction", + "output_name": "output" + } + }, + "tool_errors": null, + "tool_id": "toolshed.g2.bx.psu.edu/repos/devteam/join/gops_join_1/1.0.0", + "tool_state": "{\"input2\": \"null\", \"__page__\": 0, \"input1\": \"null\", \"min\": \"\\\"1\\\"\", \"__rerun_remap_job_id__\": null, \"fill\": \"\\\"none\\\"\"}", + "tool_version": "1.0.0", + "type": "tool", + "user_outputs": [] + }, + "13": { + "annotation": "", + "id": 13, + "input_connections": { + "input": { + "id": 12, + "output_name": "output" + } + }, + "inputs": [], + "name": "Check microsatellites motif compatibility", + "outputs": [ + { + "name": "output", + "type": "tabular" + } + ], + "position": { + "left": 1122.328125, + "top": 710.84375 + }, + "post_job_actions": { + "HideDatasetActionoutput": { + "action_arguments": {}, + "action_type": "HideDatasetAction", + "output_name": "output" + } + }, + "tool_errors": null, + "tool_id": "toolshed.g2.bx.psu.edu/repos/arkarachai-fungtammasan/microsatellite_ngs/microsatcompat/1.0.0", + "tool_state": "{\"__page__\": 0, \"input\": \"null\", \"__rerun_remap_job_id__\": null, \"column1\": \"\\\"4\\\"\", \"column2\": \"\\\"10\\\"\"}", + "tool_version": "1.0.0", + "type": "tool", + "user_outputs": [] + }, + "14": { + "annotation": "", + "id": 14, + "input_connections": { + "input": { + "id": 13, + "output_name": "output" + } + }, + "inputs": [], + "name": "Select uninterrupted microsatellites", + "outputs": [ + { + "name": "output", + "type": "tabular" + } + ], + "position": { + "left": 1131.21875, + "top": 852.90625 + }, + "post_job_actions": { + "HideDatasetActionoutput": { + "action_arguments": {}, + "action_type": "HideDatasetAction", + "output_name": "output" + } + }, + "tool_errors": null, + "tool_id": "toolshed.g2.bx.psu.edu/repos/arkarachai-fungtammasan/microsatellite_ngs/microsatpurity/1.0.0", + "tool_state": "{\"__page__\": 0, \"column_n\": \"\\\"0\\\"\", \"__rerun_remap_job_id__\": null, \"period\": \"\\\"1\\\"\", \"input\": \"null\"}", + "tool_version": "1.0.0", + "type": "tool", + "user_outputs": [] + }, + "15": { + "annotation": "", + "id": 15, + "input_connections": { + "input": { + "id": 14, + "output_name": "output" + } + }, + "inputs": [], + "name": "Cut", + "outputs": [ + { + "name": "out_file1", + "type": "tabular" + } + ], + "position": { + "left": 1161, + "top": 963.953125 + }, + "post_job_actions": { + "HideDatasetActionout_file1": { + "action_arguments": {}, + "action_type": "HideDatasetAction", + "output_name": "out_file1" + } + }, + "tool_errors": null, + "tool_id": "Cut1", + "tool_state": "{\"columnList\": \"\\\"c1,c2,c3,c4,c5,c7\\\"\", \"input\": \"null\", \"delimiter\": \"\\\"T\\\"\", \"__rerun_remap_job_id__\": null, \"__page__\": 0}", + "tool_version": "1.0.2", + "type": "tool", + "user_outputs": [] + }, + "16": { + "annotation": "", + "id": 16, + "input_connections": { + "input": { + "id": 15, + "output_name": "out_file1" + } + }, + "inputs": [], + "name": "Add column", + "outputs": [ + { + "name": "out_file1", + "type": "input" + } + ], + "position": { + "left": 1168, + "top": 1069.953125 + }, + "post_job_actions": { + "HideDatasetActionout_file1": { + "action_arguments": {}, + "action_type": "HideDatasetAction", + "output_name": "out_file1" + } + }, + "tool_errors": null, + "tool_id": "addValue", + "tool_state": "{\"__page__\": 0, \"input\": \"null\", \"__rerun_remap_job_id__\": null, \"exp\": \"\\\"_\\\"\", \"iterate\": \"\\\"no\\\"\"}", + "tool_version": "1.0.0", + "type": "tool", + "user_outputs": [] + }, + "17": { + "annotation": "", + "id": 17, + "input_connections": { + "input1": { + "id": 16, + "output_name": "out_file1" + } + }, + "inputs": [], + "name": "Merge Columns", + "outputs": [ + { + "name": "out_file1", + "type": "tabular" + } + ], + "position": { + "left": 1175, + "top": 1184.953125 + }, + "post_job_actions": { + "HideDatasetActionout_file1": { + "action_arguments": {}, + "action_type": "HideDatasetAction", + "output_name": "out_file1" + } + }, + "tool_errors": null, + "tool_id": "mergeCols1", + "tool_state": "{\"__page__\": 0, \"input1\": \"null\", \"__rerun_remap_job_id__\": null, \"col2\": \"{\\\"__class__\\\": \\\"UnvalidatedValue\\\", \\\"value\\\": \\\"7\\\"}\", \"col1\": \"{\\\"__class__\\\": \\\"UnvalidatedValue\\\", \\\"value\\\": \\\"1\\\"}\", \"columns\": \"[{\\\"__index__\\\": 0, \\\"datacol\\\": {\\\"__class__\\\": \\\"UnvalidatedValue\\\", \\\"value\\\": \\\"2\\\"}}, {\\\"__index__\\\": 1, \\\"datacol\\\": {\\\"__class__\\\": \\\"UnvalidatedValue\\\", \\\"value\\\": \\\"7\\\"}}, {\\\"__index__\\\": 2, \\\"datacol\\\": {\\\"__class__\\\": \\\"UnvalidatedValue\\\", \\\"value\\\": \\\"3\\\"}}]\"}", + "tool_version": "1.0.1", + "type": "tool", + "user_outputs": [] + }, + "18": { + "annotation": "", + "id": 18, + "input_connections": { + "input1": { + "id": 17, + "output_name": "out_file1" + } + }, + "inputs": [], + "name": "Group", + "outputs": [ + { + "name": "out_file1", + "type": "tabular" + } + ], + "position": { + "left": 1175, + "top": 1297.953125 + }, + "post_job_actions": { + "HideDatasetActionout_file1": { + "action_arguments": {}, + "action_type": "HideDatasetAction", + "output_name": "out_file1" + } + }, + "tool_errors": null, + "tool_id": "Grouping1", + "tool_state": "{\"operations\": \"[{\\\"opcol\\\": {\\\"__class__\\\": \\\"UnvalidatedValue\\\", \\\"value\\\": \\\"6\\\"}, \\\"__index__\\\": 0, \\\"optype\\\": \\\"cat\\\", \\\"opround\\\": \\\"no\\\"}, {\\\"opcol\\\": {\\\"__class__\\\": \\\"UnvalidatedValue\\\", \\\"value\\\": \\\"4\\\"}, \\\"__index__\\\": 1, \\\"optype\\\": \\\"cat_uniq\\\", \\\"opround\\\": \\\"no\\\"}]\", \"__page__\": 0, \"input1\": \"null\", \"ignorelines\": \"null\", \"groupcol\": \"{\\\"__class__\\\": \\\"UnvalidatedValue\\\", \\\"value\\\": \\\"8\\\"}\", \"__rerun_remap_job_id__\": null, \"ignorecase\": \"\\\"False\\\"\"}", + "tool_version": "2.1.0", + "type": "tool", + "user_outputs": [] + }, + "19": { + "annotation": "", + "id": 19, + "input_connections": { + "input": { + "id": 18, + "output_name": "out_file1" + } + }, + "inputs": [], + "name": "Filter", + "outputs": [ + { + "name": "out_file1", + "type": "input" + } + ], + "position": { + "left": 1186, + "top": 1405.953125 + }, + "post_job_actions": { + "RenameDatasetActionout_file1": { + "action_arguments": { + "newname": "TR profile" + }, + "action_type": "RenameDatasetAction", + "output_name": "out_file1" + } + }, + "tool_errors": null, + "tool_id": "Filter1", + "tool_state": "{\"input\": \"null\", \"__rerun_remap_job_id__\": null, \"header_lines\": \"\\\"0\\\"\", \"cond\": \"\\\"c2.count(\\\\\\\",\\\\\\\")>=4\\\"\", \"__page__\": 0}", + "tool_version": "1.1.0", + "type": "tool", + "user_outputs": [] + }, + "20": { + "annotation": "", + "id": 20, + "input_connections": { + "microsat_error_profile": { + "id": 2, + "output_name": "output" + }, + "microsat_raw": { + "id": 19, + "output_name": "out_file1" + } + }, + "inputs": [], + "name": "Correct genotype for microsatellite errors", + "outputs": [ + { + "name": "microsat_corrected", + "type": "tabular" + } + ], + "position": { + "left": 1591.328125, + "top": 456.8125 + }, + "post_job_actions": { + "RenameDatasetActionmicrosat_corrected": { + "action_arguments": { + "newname": "Genotype file" + }, + "action_type": "RenameDatasetAction", + "output_name": "microsat_corrected" + } + }, + "tool_errors": null, + "tool_id": "toolshed.g2.bx.psu.edu/repos/arkarachai-fungtammasan/microsatellite_ngs/GenotypeSTR/2.0.0", + "tool_state": "{\"microsat_raw\": \"null\", \"__page__\": 0, \"__rerun_remap_job_id__\": null, \"microsat_error_profile\": \"null\", \"expectedminorallele\": \"\\\"0.5\\\"\"}", + "tool_version": "2.0.0", + "type": "tool", + "user_outputs": [] + } + } +} \ No newline at end of file