annotate Galaxy-Workflow-microsatellite_profiling.ga @ 3:3d58c22ea6c9 draft

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author arkarachai-fungtammasan
date Sat, 22 Aug 2015 12:12:35 -0400
parents 07588b899c13
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2 "a_galaxy_workflow": "true",
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3 "annotation": "Profile length of microsatellites or short tandem repeats from short read data",
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7 "0": {
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8 "annotation": "input raw read that you want to detect Tandem reepats (TRs)/microsatellites",
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13 "description": "input raw read that you want to detect Tandem reepats (TRs)/microsatellites",
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14 "name": "single end fastq"
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36 "description": "need to be prepared by user using TR genome profiling",
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37 "name": "TR in genome"
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arkarachai-fungtammasan
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07588b899c13 Uploaded
arkarachai-fungtammasan
parents:
diff changeset
547 "id": 15,
07588b899c13 Uploaded
arkarachai-fungtammasan
parents:
diff changeset
548 "input_connections": {
07588b899c13 Uploaded
arkarachai-fungtammasan
parents:
diff changeset
549 "input": {
07588b899c13 Uploaded
arkarachai-fungtammasan
parents:
diff changeset
550 "id": 14,
07588b899c13 Uploaded
arkarachai-fungtammasan
parents:
diff changeset
551 "output_name": "output"
07588b899c13 Uploaded
arkarachai-fungtammasan
parents:
diff changeset
552 }
07588b899c13 Uploaded
arkarachai-fungtammasan
parents:
diff changeset
553 },
07588b899c13 Uploaded
arkarachai-fungtammasan
parents:
diff changeset
554 "inputs": [],
07588b899c13 Uploaded
arkarachai-fungtammasan
parents:
diff changeset
555 "name": "Cut",
07588b899c13 Uploaded
arkarachai-fungtammasan
parents:
diff changeset
556 "outputs": [
07588b899c13 Uploaded
arkarachai-fungtammasan
parents:
diff changeset
557 {
07588b899c13 Uploaded
arkarachai-fungtammasan
parents:
diff changeset
558 "name": "out_file1",
07588b899c13 Uploaded
arkarachai-fungtammasan
parents:
diff changeset
559 "type": "tabular"
07588b899c13 Uploaded
arkarachai-fungtammasan
parents:
diff changeset
560 }
07588b899c13 Uploaded
arkarachai-fungtammasan
parents:
diff changeset
561 ],
07588b899c13 Uploaded
arkarachai-fungtammasan
parents:
diff changeset
562 "position": {
07588b899c13 Uploaded
arkarachai-fungtammasan
parents:
diff changeset
563 "left": 1161,
07588b899c13 Uploaded
arkarachai-fungtammasan
parents:
diff changeset
564 "top": 963.953125
07588b899c13 Uploaded
arkarachai-fungtammasan
parents:
diff changeset
565 },
07588b899c13 Uploaded
arkarachai-fungtammasan
parents:
diff changeset
566 "post_job_actions": {
07588b899c13 Uploaded
arkarachai-fungtammasan
parents:
diff changeset
567 "HideDatasetActionout_file1": {
07588b899c13 Uploaded
arkarachai-fungtammasan
parents:
diff changeset
568 "action_arguments": {},
07588b899c13 Uploaded
arkarachai-fungtammasan
parents:
diff changeset
569 "action_type": "HideDatasetAction",
07588b899c13 Uploaded
arkarachai-fungtammasan
parents:
diff changeset
570 "output_name": "out_file1"
07588b899c13 Uploaded
arkarachai-fungtammasan
parents:
diff changeset
571 }
07588b899c13 Uploaded
arkarachai-fungtammasan
parents:
diff changeset
572 },
07588b899c13 Uploaded
arkarachai-fungtammasan
parents:
diff changeset
573 "tool_errors": null,
07588b899c13 Uploaded
arkarachai-fungtammasan
parents:
diff changeset
574 "tool_id": "Cut1",
07588b899c13 Uploaded
arkarachai-fungtammasan
parents:
diff changeset
575 "tool_state": "{\"columnList\": \"\\\"c1,c2,c3,c4,c5,c7\\\"\", \"input\": \"null\", \"delimiter\": \"\\\"T\\\"\", \"__rerun_remap_job_id__\": null, \"__page__\": 0}",
07588b899c13 Uploaded
arkarachai-fungtammasan
parents:
diff changeset
576 "tool_version": "1.0.2",
07588b899c13 Uploaded
arkarachai-fungtammasan
parents:
diff changeset
577 "type": "tool",
07588b899c13 Uploaded
arkarachai-fungtammasan
parents:
diff changeset
578 "user_outputs": []
07588b899c13 Uploaded
arkarachai-fungtammasan
parents:
diff changeset
579 },
07588b899c13 Uploaded
arkarachai-fungtammasan
parents:
diff changeset
580 "16": {
07588b899c13 Uploaded
arkarachai-fungtammasan
parents:
diff changeset
581 "annotation": "",
07588b899c13 Uploaded
arkarachai-fungtammasan
parents:
diff changeset
582 "id": 16,
07588b899c13 Uploaded
arkarachai-fungtammasan
parents:
diff changeset
583 "input_connections": {
07588b899c13 Uploaded
arkarachai-fungtammasan
parents:
diff changeset
584 "input": {
07588b899c13 Uploaded
arkarachai-fungtammasan
parents:
diff changeset
585 "id": 15,
07588b899c13 Uploaded
arkarachai-fungtammasan
parents:
diff changeset
586 "output_name": "out_file1"
07588b899c13 Uploaded
arkarachai-fungtammasan
parents:
diff changeset
587 }
07588b899c13 Uploaded
arkarachai-fungtammasan
parents:
diff changeset
588 },
07588b899c13 Uploaded
arkarachai-fungtammasan
parents:
diff changeset
589 "inputs": [],
07588b899c13 Uploaded
arkarachai-fungtammasan
parents:
diff changeset
590 "name": "Add column",
07588b899c13 Uploaded
arkarachai-fungtammasan
parents:
diff changeset
591 "outputs": [
07588b899c13 Uploaded
arkarachai-fungtammasan
parents:
diff changeset
592 {
07588b899c13 Uploaded
arkarachai-fungtammasan
parents:
diff changeset
593 "name": "out_file1",
07588b899c13 Uploaded
arkarachai-fungtammasan
parents:
diff changeset
594 "type": "input"
07588b899c13 Uploaded
arkarachai-fungtammasan
parents:
diff changeset
595 }
07588b899c13 Uploaded
arkarachai-fungtammasan
parents:
diff changeset
596 ],
07588b899c13 Uploaded
arkarachai-fungtammasan
parents:
diff changeset
597 "position": {
07588b899c13 Uploaded
arkarachai-fungtammasan
parents:
diff changeset
598 "left": 1168,
07588b899c13 Uploaded
arkarachai-fungtammasan
parents:
diff changeset
599 "top": 1069.953125
07588b899c13 Uploaded
arkarachai-fungtammasan
parents:
diff changeset
600 },
07588b899c13 Uploaded
arkarachai-fungtammasan
parents:
diff changeset
601 "post_job_actions": {
07588b899c13 Uploaded
arkarachai-fungtammasan
parents:
diff changeset
602 "HideDatasetActionout_file1": {
07588b899c13 Uploaded
arkarachai-fungtammasan
parents:
diff changeset
603 "action_arguments": {},
07588b899c13 Uploaded
arkarachai-fungtammasan
parents:
diff changeset
604 "action_type": "HideDatasetAction",
07588b899c13 Uploaded
arkarachai-fungtammasan
parents:
diff changeset
605 "output_name": "out_file1"
07588b899c13 Uploaded
arkarachai-fungtammasan
parents:
diff changeset
606 }
07588b899c13 Uploaded
arkarachai-fungtammasan
parents:
diff changeset
607 },
07588b899c13 Uploaded
arkarachai-fungtammasan
parents:
diff changeset
608 "tool_errors": null,
07588b899c13 Uploaded
arkarachai-fungtammasan
parents:
diff changeset
609 "tool_id": "addValue",
07588b899c13 Uploaded
arkarachai-fungtammasan
parents:
diff changeset
610 "tool_state": "{\"__page__\": 0, \"input\": \"null\", \"__rerun_remap_job_id__\": null, \"exp\": \"\\\"_\\\"\", \"iterate\": \"\\\"no\\\"\"}",
07588b899c13 Uploaded
arkarachai-fungtammasan
parents:
diff changeset
611 "tool_version": "1.0.0",
07588b899c13 Uploaded
arkarachai-fungtammasan
parents:
diff changeset
612 "type": "tool",
07588b899c13 Uploaded
arkarachai-fungtammasan
parents:
diff changeset
613 "user_outputs": []
07588b899c13 Uploaded
arkarachai-fungtammasan
parents:
diff changeset
614 },
07588b899c13 Uploaded
arkarachai-fungtammasan
parents:
diff changeset
615 "17": {
07588b899c13 Uploaded
arkarachai-fungtammasan
parents:
diff changeset
616 "annotation": "",
07588b899c13 Uploaded
arkarachai-fungtammasan
parents:
diff changeset
617 "id": 17,
07588b899c13 Uploaded
arkarachai-fungtammasan
parents:
diff changeset
618 "input_connections": {
07588b899c13 Uploaded
arkarachai-fungtammasan
parents:
diff changeset
619 "input1": {
07588b899c13 Uploaded
arkarachai-fungtammasan
parents:
diff changeset
620 "id": 16,
07588b899c13 Uploaded
arkarachai-fungtammasan
parents:
diff changeset
621 "output_name": "out_file1"
07588b899c13 Uploaded
arkarachai-fungtammasan
parents:
diff changeset
622 }
07588b899c13 Uploaded
arkarachai-fungtammasan
parents:
diff changeset
623 },
07588b899c13 Uploaded
arkarachai-fungtammasan
parents:
diff changeset
624 "inputs": [],
07588b899c13 Uploaded
arkarachai-fungtammasan
parents:
diff changeset
625 "name": "Merge Columns",
07588b899c13 Uploaded
arkarachai-fungtammasan
parents:
diff changeset
626 "outputs": [
07588b899c13 Uploaded
arkarachai-fungtammasan
parents:
diff changeset
627 {
07588b899c13 Uploaded
arkarachai-fungtammasan
parents:
diff changeset
628 "name": "out_file1",
07588b899c13 Uploaded
arkarachai-fungtammasan
parents:
diff changeset
629 "type": "tabular"
07588b899c13 Uploaded
arkarachai-fungtammasan
parents:
diff changeset
630 }
07588b899c13 Uploaded
arkarachai-fungtammasan
parents:
diff changeset
631 ],
07588b899c13 Uploaded
arkarachai-fungtammasan
parents:
diff changeset
632 "position": {
07588b899c13 Uploaded
arkarachai-fungtammasan
parents:
diff changeset
633 "left": 1175,
07588b899c13 Uploaded
arkarachai-fungtammasan
parents:
diff changeset
634 "top": 1184.953125
07588b899c13 Uploaded
arkarachai-fungtammasan
parents:
diff changeset
635 },
07588b899c13 Uploaded
arkarachai-fungtammasan
parents:
diff changeset
636 "post_job_actions": {
07588b899c13 Uploaded
arkarachai-fungtammasan
parents:
diff changeset
637 "HideDatasetActionout_file1": {
07588b899c13 Uploaded
arkarachai-fungtammasan
parents:
diff changeset
638 "action_arguments": {},
07588b899c13 Uploaded
arkarachai-fungtammasan
parents:
diff changeset
639 "action_type": "HideDatasetAction",
07588b899c13 Uploaded
arkarachai-fungtammasan
parents:
diff changeset
640 "output_name": "out_file1"
07588b899c13 Uploaded
arkarachai-fungtammasan
parents:
diff changeset
641 }
07588b899c13 Uploaded
arkarachai-fungtammasan
parents:
diff changeset
642 },
07588b899c13 Uploaded
arkarachai-fungtammasan
parents:
diff changeset
643 "tool_errors": null,
07588b899c13 Uploaded
arkarachai-fungtammasan
parents:
diff changeset
644 "tool_id": "mergeCols1",
07588b899c13 Uploaded
arkarachai-fungtammasan
parents:
diff changeset
645 "tool_state": "{\"__page__\": 0, \"input1\": \"null\", \"__rerun_remap_job_id__\": null, \"col2\": \"{\\\"__class__\\\": \\\"UnvalidatedValue\\\", \\\"value\\\": \\\"7\\\"}\", \"col1\": \"{\\\"__class__\\\": \\\"UnvalidatedValue\\\", \\\"value\\\": \\\"1\\\"}\", \"columns\": \"[{\\\"__index__\\\": 0, \\\"datacol\\\": {\\\"__class__\\\": \\\"UnvalidatedValue\\\", \\\"value\\\": \\\"2\\\"}}, {\\\"__index__\\\": 1, \\\"datacol\\\": {\\\"__class__\\\": \\\"UnvalidatedValue\\\", \\\"value\\\": \\\"7\\\"}}, {\\\"__index__\\\": 2, \\\"datacol\\\": {\\\"__class__\\\": \\\"UnvalidatedValue\\\", \\\"value\\\": \\\"3\\\"}}]\"}",
07588b899c13 Uploaded
arkarachai-fungtammasan
parents:
diff changeset
646 "tool_version": "1.0.1",
07588b899c13 Uploaded
arkarachai-fungtammasan
parents:
diff changeset
647 "type": "tool",
07588b899c13 Uploaded
arkarachai-fungtammasan
parents:
diff changeset
648 "user_outputs": []
07588b899c13 Uploaded
arkarachai-fungtammasan
parents:
diff changeset
649 },
07588b899c13 Uploaded
arkarachai-fungtammasan
parents:
diff changeset
650 "18": {
07588b899c13 Uploaded
arkarachai-fungtammasan
parents:
diff changeset
651 "annotation": "",
07588b899c13 Uploaded
arkarachai-fungtammasan
parents:
diff changeset
652 "id": 18,
07588b899c13 Uploaded
arkarachai-fungtammasan
parents:
diff changeset
653 "input_connections": {
07588b899c13 Uploaded
arkarachai-fungtammasan
parents:
diff changeset
654 "input1": {
07588b899c13 Uploaded
arkarachai-fungtammasan
parents:
diff changeset
655 "id": 17,
07588b899c13 Uploaded
arkarachai-fungtammasan
parents:
diff changeset
656 "output_name": "out_file1"
07588b899c13 Uploaded
arkarachai-fungtammasan
parents:
diff changeset
657 }
07588b899c13 Uploaded
arkarachai-fungtammasan
parents:
diff changeset
658 },
07588b899c13 Uploaded
arkarachai-fungtammasan
parents:
diff changeset
659 "inputs": [],
07588b899c13 Uploaded
arkarachai-fungtammasan
parents:
diff changeset
660 "name": "Group",
07588b899c13 Uploaded
arkarachai-fungtammasan
parents:
diff changeset
661 "outputs": [
07588b899c13 Uploaded
arkarachai-fungtammasan
parents:
diff changeset
662 {
07588b899c13 Uploaded
arkarachai-fungtammasan
parents:
diff changeset
663 "name": "out_file1",
07588b899c13 Uploaded
arkarachai-fungtammasan
parents:
diff changeset
664 "type": "tabular"
07588b899c13 Uploaded
arkarachai-fungtammasan
parents:
diff changeset
665 }
07588b899c13 Uploaded
arkarachai-fungtammasan
parents:
diff changeset
666 ],
07588b899c13 Uploaded
arkarachai-fungtammasan
parents:
diff changeset
667 "position": {
07588b899c13 Uploaded
arkarachai-fungtammasan
parents:
diff changeset
668 "left": 1175,
07588b899c13 Uploaded
arkarachai-fungtammasan
parents:
diff changeset
669 "top": 1297.953125
07588b899c13 Uploaded
arkarachai-fungtammasan
parents:
diff changeset
670 },
07588b899c13 Uploaded
arkarachai-fungtammasan
parents:
diff changeset
671 "post_job_actions": {
07588b899c13 Uploaded
arkarachai-fungtammasan
parents:
diff changeset
672 "HideDatasetActionout_file1": {
07588b899c13 Uploaded
arkarachai-fungtammasan
parents:
diff changeset
673 "action_arguments": {},
07588b899c13 Uploaded
arkarachai-fungtammasan
parents:
diff changeset
674 "action_type": "HideDatasetAction",
07588b899c13 Uploaded
arkarachai-fungtammasan
parents:
diff changeset
675 "output_name": "out_file1"
07588b899c13 Uploaded
arkarachai-fungtammasan
parents:
diff changeset
676 }
07588b899c13 Uploaded
arkarachai-fungtammasan
parents:
diff changeset
677 },
07588b899c13 Uploaded
arkarachai-fungtammasan
parents:
diff changeset
678 "tool_errors": null,
07588b899c13 Uploaded
arkarachai-fungtammasan
parents:
diff changeset
679 "tool_id": "Grouping1",
07588b899c13 Uploaded
arkarachai-fungtammasan
parents:
diff changeset
680 "tool_state": "{\"operations\": \"[{\\\"opcol\\\": {\\\"__class__\\\": \\\"UnvalidatedValue\\\", \\\"value\\\": \\\"6\\\"}, \\\"__index__\\\": 0, \\\"optype\\\": \\\"cat\\\", \\\"opround\\\": \\\"no\\\"}, {\\\"opcol\\\": {\\\"__class__\\\": \\\"UnvalidatedValue\\\", \\\"value\\\": \\\"4\\\"}, \\\"__index__\\\": 1, \\\"optype\\\": \\\"cat_uniq\\\", \\\"opround\\\": \\\"no\\\"}]\", \"__page__\": 0, \"input1\": \"null\", \"ignorelines\": \"null\", \"groupcol\": \"{\\\"__class__\\\": \\\"UnvalidatedValue\\\", \\\"value\\\": \\\"8\\\"}\", \"__rerun_remap_job_id__\": null, \"ignorecase\": \"\\\"False\\\"\"}",
07588b899c13 Uploaded
arkarachai-fungtammasan
parents:
diff changeset
681 "tool_version": "2.1.0",
07588b899c13 Uploaded
arkarachai-fungtammasan
parents:
diff changeset
682 "type": "tool",
07588b899c13 Uploaded
arkarachai-fungtammasan
parents:
diff changeset
683 "user_outputs": []
07588b899c13 Uploaded
arkarachai-fungtammasan
parents:
diff changeset
684 },
07588b899c13 Uploaded
arkarachai-fungtammasan
parents:
diff changeset
685 "19": {
07588b899c13 Uploaded
arkarachai-fungtammasan
parents:
diff changeset
686 "annotation": "",
07588b899c13 Uploaded
arkarachai-fungtammasan
parents:
diff changeset
687 "id": 19,
07588b899c13 Uploaded
arkarachai-fungtammasan
parents:
diff changeset
688 "input_connections": {
07588b899c13 Uploaded
arkarachai-fungtammasan
parents:
diff changeset
689 "input": {
07588b899c13 Uploaded
arkarachai-fungtammasan
parents:
diff changeset
690 "id": 18,
07588b899c13 Uploaded
arkarachai-fungtammasan
parents:
diff changeset
691 "output_name": "out_file1"
07588b899c13 Uploaded
arkarachai-fungtammasan
parents:
diff changeset
692 }
07588b899c13 Uploaded
arkarachai-fungtammasan
parents:
diff changeset
693 },
07588b899c13 Uploaded
arkarachai-fungtammasan
parents:
diff changeset
694 "inputs": [],
07588b899c13 Uploaded
arkarachai-fungtammasan
parents:
diff changeset
695 "name": "Filter",
07588b899c13 Uploaded
arkarachai-fungtammasan
parents:
diff changeset
696 "outputs": [
07588b899c13 Uploaded
arkarachai-fungtammasan
parents:
diff changeset
697 {
07588b899c13 Uploaded
arkarachai-fungtammasan
parents:
diff changeset
698 "name": "out_file1",
07588b899c13 Uploaded
arkarachai-fungtammasan
parents:
diff changeset
699 "type": "input"
07588b899c13 Uploaded
arkarachai-fungtammasan
parents:
diff changeset
700 }
07588b899c13 Uploaded
arkarachai-fungtammasan
parents:
diff changeset
701 ],
07588b899c13 Uploaded
arkarachai-fungtammasan
parents:
diff changeset
702 "position": {
07588b899c13 Uploaded
arkarachai-fungtammasan
parents:
diff changeset
703 "left": 1186,
07588b899c13 Uploaded
arkarachai-fungtammasan
parents:
diff changeset
704 "top": 1405.953125
07588b899c13 Uploaded
arkarachai-fungtammasan
parents:
diff changeset
705 },
07588b899c13 Uploaded
arkarachai-fungtammasan
parents:
diff changeset
706 "post_job_actions": {
07588b899c13 Uploaded
arkarachai-fungtammasan
parents:
diff changeset
707 "RenameDatasetActionout_file1": {
07588b899c13 Uploaded
arkarachai-fungtammasan
parents:
diff changeset
708 "action_arguments": {
07588b899c13 Uploaded
arkarachai-fungtammasan
parents:
diff changeset
709 "newname": "TR profile"
07588b899c13 Uploaded
arkarachai-fungtammasan
parents:
diff changeset
710 },
07588b899c13 Uploaded
arkarachai-fungtammasan
parents:
diff changeset
711 "action_type": "RenameDatasetAction",
07588b899c13 Uploaded
arkarachai-fungtammasan
parents:
diff changeset
712 "output_name": "out_file1"
07588b899c13 Uploaded
arkarachai-fungtammasan
parents:
diff changeset
713 }
07588b899c13 Uploaded
arkarachai-fungtammasan
parents:
diff changeset
714 },
07588b899c13 Uploaded
arkarachai-fungtammasan
parents:
diff changeset
715 "tool_errors": null,
07588b899c13 Uploaded
arkarachai-fungtammasan
parents:
diff changeset
716 "tool_id": "Filter1",
07588b899c13 Uploaded
arkarachai-fungtammasan
parents:
diff changeset
717 "tool_state": "{\"input\": \"null\", \"__rerun_remap_job_id__\": null, \"header_lines\": \"\\\"0\\\"\", \"cond\": \"\\\"c2.count(\\\\\\\",\\\\\\\")>=4\\\"\", \"__page__\": 0}",
07588b899c13 Uploaded
arkarachai-fungtammasan
parents:
diff changeset
718 "tool_version": "1.1.0",
07588b899c13 Uploaded
arkarachai-fungtammasan
parents:
diff changeset
719 "type": "tool",
07588b899c13 Uploaded
arkarachai-fungtammasan
parents:
diff changeset
720 "user_outputs": []
07588b899c13 Uploaded
arkarachai-fungtammasan
parents:
diff changeset
721 },
07588b899c13 Uploaded
arkarachai-fungtammasan
parents:
diff changeset
722 "20": {
07588b899c13 Uploaded
arkarachai-fungtammasan
parents:
diff changeset
723 "annotation": "",
07588b899c13 Uploaded
arkarachai-fungtammasan
parents:
diff changeset
724 "id": 20,
07588b899c13 Uploaded
arkarachai-fungtammasan
parents:
diff changeset
725 "input_connections": {
07588b899c13 Uploaded
arkarachai-fungtammasan
parents:
diff changeset
726 "microsat_error_profile": {
07588b899c13 Uploaded
arkarachai-fungtammasan
parents:
diff changeset
727 "id": 2,
07588b899c13 Uploaded
arkarachai-fungtammasan
parents:
diff changeset
728 "output_name": "output"
07588b899c13 Uploaded
arkarachai-fungtammasan
parents:
diff changeset
729 },
07588b899c13 Uploaded
arkarachai-fungtammasan
parents:
diff changeset
730 "microsat_raw": {
07588b899c13 Uploaded
arkarachai-fungtammasan
parents:
diff changeset
731 "id": 19,
07588b899c13 Uploaded
arkarachai-fungtammasan
parents:
diff changeset
732 "output_name": "out_file1"
07588b899c13 Uploaded
arkarachai-fungtammasan
parents:
diff changeset
733 }
07588b899c13 Uploaded
arkarachai-fungtammasan
parents:
diff changeset
734 },
07588b899c13 Uploaded
arkarachai-fungtammasan
parents:
diff changeset
735 "inputs": [],
07588b899c13 Uploaded
arkarachai-fungtammasan
parents:
diff changeset
736 "name": "Correct genotype for microsatellite errors",
07588b899c13 Uploaded
arkarachai-fungtammasan
parents:
diff changeset
737 "outputs": [
07588b899c13 Uploaded
arkarachai-fungtammasan
parents:
diff changeset
738 {
07588b899c13 Uploaded
arkarachai-fungtammasan
parents:
diff changeset
739 "name": "microsat_corrected",
07588b899c13 Uploaded
arkarachai-fungtammasan
parents:
diff changeset
740 "type": "tabular"
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arkarachai-fungtammasan
parents:
diff changeset
741 }
07588b899c13 Uploaded
arkarachai-fungtammasan
parents:
diff changeset
742 ],
07588b899c13 Uploaded
arkarachai-fungtammasan
parents:
diff changeset
743 "position": {
07588b899c13 Uploaded
arkarachai-fungtammasan
parents:
diff changeset
744 "left": 1591.328125,
07588b899c13 Uploaded
arkarachai-fungtammasan
parents:
diff changeset
745 "top": 456.8125
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arkarachai-fungtammasan
parents:
diff changeset
746 },
07588b899c13 Uploaded
arkarachai-fungtammasan
parents:
diff changeset
747 "post_job_actions": {
07588b899c13 Uploaded
arkarachai-fungtammasan
parents:
diff changeset
748 "RenameDatasetActionmicrosat_corrected": {
07588b899c13 Uploaded
arkarachai-fungtammasan
parents:
diff changeset
749 "action_arguments": {
07588b899c13 Uploaded
arkarachai-fungtammasan
parents:
diff changeset
750 "newname": "Genotype file"
07588b899c13 Uploaded
arkarachai-fungtammasan
parents:
diff changeset
751 },
07588b899c13 Uploaded
arkarachai-fungtammasan
parents:
diff changeset
752 "action_type": "RenameDatasetAction",
07588b899c13 Uploaded
arkarachai-fungtammasan
parents:
diff changeset
753 "output_name": "microsat_corrected"
07588b899c13 Uploaded
arkarachai-fungtammasan
parents:
diff changeset
754 }
07588b899c13 Uploaded
arkarachai-fungtammasan
parents:
diff changeset
755 },
07588b899c13 Uploaded
arkarachai-fungtammasan
parents:
diff changeset
756 "tool_errors": null,
07588b899c13 Uploaded
arkarachai-fungtammasan
parents:
diff changeset
757 "tool_id": "toolshed.g2.bx.psu.edu/repos/arkarachai-fungtammasan/microsatellite_ngs/GenotypeSTR/2.0.0",
07588b899c13 Uploaded
arkarachai-fungtammasan
parents:
diff changeset
758 "tool_state": "{\"microsat_raw\": \"null\", \"__page__\": 0, \"__rerun_remap_job_id__\": null, \"microsat_error_profile\": \"null\", \"expectedminorallele\": \"\\\"0.5\\\"\"}",
07588b899c13 Uploaded
arkarachai-fungtammasan
parents:
diff changeset
759 "tool_version": "2.0.0",
07588b899c13 Uploaded
arkarachai-fungtammasan
parents:
diff changeset
760 "type": "tool",
07588b899c13 Uploaded
arkarachai-fungtammasan
parents:
diff changeset
761 "user_outputs": []
07588b899c13 Uploaded
arkarachai-fungtammasan
parents:
diff changeset
762 }
07588b899c13 Uploaded
arkarachai-fungtammasan
parents:
diff changeset
763 }
07588b899c13 Uploaded
arkarachai-fungtammasan
parents:
diff changeset
764 }