annotate test-data/PCRinclude.allrate.bymajorallele @ 3:3d58c22ea6c9 draft

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10	10	91456	A
10	9	1259	A
10	11	605	A
10	8	16	A
10	12	8	A
10	7	2	A
11	11	39657	A
11	10	1211	A
11	12	514	A
11	9	54	A
11	13	9	A
11	8	3	A
11	14	1	A
12	12	18850	A
12	11	986	A
12	13	417	A
12	10	73	A
12	14	8	A
12	9	1	A
12	8	1	A
13	13	10201	A
13	12	885	A
13	14	320	A
13	11	83	A
13	15	12	A
13	10	8	A
14	14	3649	A
14	13	409	A
14	15	151	A
14	12	62	A
14	11	6	A
14	16	5	A
14	10	1	A
15	15	847	A
15	14	140	A
15	16	60	A
15	13	20	A
15	17	4	A
15	12	3	A
16	16	182	A
16	15	60	A
16	17	14	A
16	14	12	A
16	13	1	A
16	12	1	A
16	18	1	A
17	17	11	A
17	16	5	A
17	15	2	A
17	18	1	A
18	18	4	A
18	17	2	A
5	5	10047169	A
5	6	44	A
6	6	2808071	A
6	5	195	A
6	7	69	A
7	7	1097174	A
7	6	313	A
7	8	83	A
7	5	6	A
8	8	369496	A
8	7	387	A
8	9	248	A
8	6	3	A
8	10	2	A
9	9	184958	A
9	8	707	A
9	10	486	A
9	7	5	A
9	11	4	A
10	10	46	C
10	9	3	C
5	5	1354993	C
5	6	7	C
6	6	193431	C
6	5	14	C
6	7	2	C
7	7	22171	C
7	6	4	C
8	8	2966	C
8	9	3	C
8	7	3	C
9	9	638	C
9	8	8	C
9	7	1	C
10	10	21211	AC
10	8	3	AC
10	12	1	AC
11	11	15048	AC
11	9	10	AC
12	12	6043	AC
12	10	15	AC
12	14	1	AC
13	13	5070	AC
13	11	40	AC
13	15	1	AC
14	14	3093	AC
14	12	44	AC
14	10	1	AC
15	15	2848	AC
15	13	31	AC
15	17	1	AC
16	16	1273	AC
16	14	30	AC
16	12	2	AC
17	17	1297	AC
17	15	27	AC
18	18	1269	AC
18	16	43	AC
18	20	2	AC
18	14	1	AC
19	19	679	AC
19	17	17	AC
19	21	1	AC
20	20	645	AC
20	18	34	AC
20	22	2	AC
20	16	1	AC
21	21	723	AC
21	19	28	AC
21	17	1	AC
21	23	1	AC
22	22	499	AC
22	20	29	AC
22	18	3	AC
23	23	540	AC
23	21	30	AC
23	19	2	AC
23	25	1	AC
24	24	385	AC
24	22	38	AC
24	26	2	AC
24	20	1	AC
25	25	407	AC
25	23	22	AC
25	27	2	AC
25	21	1	AC
26	26	257	AC
26	24	30	AC
26	22	3	AC
26	28	1	AC
26	20	1	AC
27	27	339	AC
27	25	28	AC
27	23	3	AC
27	29	2	AC
28	28	202	AC
28	26	17	AC
28	30	6	AC
29	29	277	AC
29	27	29	AC
29	31	6	AC
29	25	3	AC
30	30	117	AC
30	28	12	AC
30	32	3	AC
30	18	1	AC
31	31	144	AC
31	29	18	AC
31	27	4	AC
31	33	2	AC
32	32	101	AC
32	30	23	AC
32	28	2	AC
32	34	2	AC
32	26	1	AC
33	33	106	AC
33	31	15	AC
33	35	3	AC
33	29	1	AC
34	34	33	AC
34	32	7	AC
35	35	21	AC
35	33	4	AC
35	31	1	AC
36	36	12	AC
36	34	1	AC
37	37	10	AC
37	35	3	AC
37	31	1	AC
37	39	1	AC
38	38	4	AC
38	36	1	AC
6	6	1521439	AC
7	7	513952	AC
8	8	134603	AC
8	6	2	AC
9	9	60741	AC
9	7	3	AC
9	11	1	AC
10	10	21772	AG
10	8	3	AG
10	12	1	AG
11	11	13880	AG
11	9	10	AG
11	13	1	AG
12	12	5628	AG
12	10	13	AG
12	14	4	AG
13	13	4494	AG
13	11	17	AG
14	14	1898	AG
14	12	15	AG
15	15	2427	AG
15	13	18	AG
16	16	1076	AG
16	14	24	AG
16	12	1	AG
17	17	874	AG
17	15	12	AG
17	19	1	AG
17	13	1	AG
18	18	536	AG
18	16	20	AG
18	14	1	AG
19	19	563	AG
19	17	25	AG
20	20	201	AG
20	18	14	AG
21	21	260	AG
21	19	10	AG
22	22	83	AG
22	20	5	AG
23	23	147	AG
23	21	5	AG
23	25	1	AG
24	24	99	AG
24	22	4	AG
24	18	1	AG
25	25	62	AG
25	23	3	AG
25	27	1	AG
26	26	38	AG
26	24	8	AG
27	27	24	AG
27	25	3	AG
27	23	1	AG
28	28	14	AG
28	26	2	AG
29	29	12	AG
29	27	5	AG
29	31	1	AG
30	30	7	AG
30	28	2	AG
31	31	7	AG
31	27	3	AG
31	23	1	AG
32	32	4	AG
32	28	1	AG
6	6	1880822	AG
7	7	684837	AG
7	9	1	AG
8	8	183381	AG
9	9	75547	AG
9	7	6	AG
9	11	1	AG
10	10	18179	AT
10	8	7	AT
10	12	4	AT
11	11	8969	AT
11	9	5	AT
11	13	2	AT
12	12	4888	AT
12	10	8	AT
12	14	2	AT
13	13	2785	AT
13	11	17	AT
13	15	1	AT
14	14	2310	AT
14	12	40	AT
14	16	4	AT
14	10	2	AT
15	15	1461	AT
15	13	33	AT
15	11	1	AT
15	17	1	AT
16	16	879	AT
16	14	42	AT
16	18	2	AT
16	12	1	AT
17	17	599	AT
17	15	38	AT
17	19	2	AT
17	13	1	AT
18	18	367	AT
18	16	29	AT
18	20	7	AT
18	14	1	AT
19	19	223	AT
19	17	34	AT
19	21	3	AT
20	20	97	AT
20	18	14	AT
20	16	2	AT
20	22	1	AT
21	21	60	AT
21	19	18	AT
21	17	1	AT
22	22	53	AT
22	20	15	AT
22	24	5	AT
22	18	3	AT
23	23	11	AT
23	21	1	AT
24	24	7	AT
24	20	2	AT
24	22	2	AT
6	6	1671932	AT
6	8	1	AT
7	7	595145	AT
8	8	195533	AT
8	10	5	AT
8	6	2	AT
9	9	52576	AT
9	7	3	AT
10	10	17	CG
11	11	17	CG
12	12	6	CG
6	6	4097	CG
7	7	678	CG
8	8	184	CG
9	9	19	CG
10	10	19552	AAC
11	11	19003	AAC
12	12	6245	AAC
12	9	1	AAC
13	13	3406	AAC
14	14	8448	AAC
14	11	2	AAC
15	15	2356	AAC
15	12	6	AAC
16	16	1373	AAC
16	13	4	AAC
17	17	3140	AAC
17	14	5	AAC
18	18	944	AAC
18	15	2	AAC
19	19	456	AAC
19	16	1	AAC
20	20	1474	AAC
20	17	3	AAC
21	21	328	AAC
21	18	1	AAC
22	22	178	AAC
23	23	538	AAC
23	26	1	AAC
24	24	112	AAC
25	25	60	AAC
26	26	239	AAC
26	23	1	AAC
27	27	45	AAC
28	28	58	AAC
28	25	2	AAC
29	29	77	AAC
30	30	17	AAC
31	31	38	AAC
31	28	1	AAC
32	32	94	AAC
32	29	3	AAC
33	33	15	AAC
35	35	55	AAC
35	32	1	AAC
38	38	12	AAC
41	41	6	AAC
9	9	57212	AAC
10	10	31455	AAG
11	11	11876	AAG
12	12	3458	AAG
12	9	6	AAG
13	13	1141	AAG
14	14	928	AAG
15	15	548	AAG
15	12	4	AAG
16	16	189	AAG
17	17	235	AAG
18	18	63	AAG
19	19	66	AAG
20	20	122	AAG
22	22	11	AAG
23	23	33	AAG
9	9	104524	AAG
10	10	69106	AAT
11	11	30381	AAT
12	12	12001	AAT
12	9	1	AAT
13	13	7168	AAT
13	10	2	AAT
14	14	5470	AAT
14	11	3	AAT
15	15	2524	AAT
15	12	3	AAT
16	16	1733	AAT
16	13	1	AAT
17	17	1324	AAT
17	14	3	AAT
18	18	1022	AAT
18	15	3	AAT
19	19	502	AAT
19	16	3	AAT
20	20	570	AAT
20	17	2	AAT
21	21	370	AAT
21	18	1	AAT
22	22	98	AAT
23	23	164	AAT
23	20	3	AAT
24	24	143	AAT
24	21	1	AAT
25	25	122	AAT
25	22	1	AAT
26	26	45	AAT
26	23	2	AAT
27	27	32	AAT
27	24	1	AAT
28	28	6	AAT
29	29	64	AAT
29	26	1	AAT
30	30	28	AAT
30	24	1	AAT
31	31	9	AAT
32	32	9	AAT
32	29	1	AAT
38	38	6	AAT
9	9	179182	AAT
9	12	1	AAT
10	10	14290	ACC
11	11	5692	ACC
12	12	1795	ACC
13	13	1141	ACC
14	14	545	ACC
15	15	308	ACC
16	16	162	ACC
17	17	107	ACC
18	18	23	ACC
19	19	35	ACC
20	20	44	ACC
21	21	5	ACC
22	22	5	ACC
22	19	1	ACC
23	23	11	ACC
25	25	7	ACC
26	26	7	ACC
27	27	10	ACC
28	28	24	ACC
28	25	1	ACC
35	35	5	ACC
9	9	46614	ACC
10	10	2865	ACG
11	11	900	ACG
12	12	325	ACG
13	13	82	ACG
14	14	83	ACG
9	9	9465	ACG
10	10	6269	ACT
11	11	2284	ACT
12	12	634	ACT
13	13	441	ACT
14	14	295	ACT
15	15	118	ACT
16	16	60	ACT
17	17	71	ACT
18	18	58	ACT
19	19	42	ACT
20	20	24	ACT
24	24	5	ACT
37	37	8	ACT
41	41	5	ACT
41	35	1	ACT
9	9	20025	ACT
10	10	2897	AGC
11	11	948	AGC
12	12	320	AGC
13	13	97	AGC
14	14	87	AGC
15	15	13	AGC
16	16	9	AGC
17	17	25	AGC
17	14	1	AGC
9	9	9579	AGC
10	10	21141	AGG
11	11	8128	AGG
12	12	2964	AGG
13	13	1209	AGG
14	14	860	AGG
15	15	320	AGG
16	16	190	AGG
17	17	225	AGG
18	18	147	AGG
20	20	80	AGG
21	21	9	AGG
22	22	35	AGG
23	23	27	AGG
24	24	8	AGG
26	26	9	AGG
9	9	57350	AGG
10	10	5964	ATC
11	11	2346	ATC
12	12	789	ATC
13	13	386	ATC
14	14	285	ATC
15	15	165	ATC
16	16	93	ATC
17	17	149	ATC
18	18	51	ATC
19	19	6	ATC
20	20	15	ATC
21	21	15	ATC
22	22	29	ATC
23	23	25	ATC
24	24	24	ATC
26	26	34	ATC
27	27	9	ATC
28	28	30	ATC
29	29	8	ATC
30	30	8	ATC
31	31	11	ATC
34	34	11	ATC
34	31	1	ATC
36	36	5	ATC
9	9	19837	ATC
10	10	11	CCG
11	11	24	CCG
14	14	5	CCG
16	16	5	CCG
9	9	135	CCG
12	12	10192	AAAC
13	13	4917	AAAC
14	14	4704	AAAC
15	15	12713	AAAC
16	16	2415	AAAC
17	17	1431	AAAC
18	18	1861	AAAC
18	14	2	AAAC
19	19	5254	AAAC
19	15	2	AAAC
19	23	1	AAAC
20	20	913	AAAC
20	16	1	AAAC
21	21	615	AAAC
22	22	509	AAAC
22	18	2	AAAC
23	23	2249	AAAC
23	19	5	AAAC
23	15	1	AAAC
24	24	329	AAAC
24	20	2	AAAC
25	25	230	AAAC
25	21	1	AAAC
26	26	175	AAAC
27	27	548	AAAC
27	23	2	AAAC
28	28	195	AAAC
28	24	1	AAAC
29	29	62	AAAC
30	30	67	AAAC
31	31	165	AAAC
31	27	1	AAAC
32	32	64	AAAC
33	33	63	AAAC
34	34	21	AAAC
35	35	40	AAAC
36	36	55	AAAC
37	37	6	AAAC
38	38	8	AAAC
39	39	10	AAAC
40	40	7	AAAC
45	45	7	AAAC
12	12	12855	AAAG
12	16	13	AAAG
12	20	9	AAAG
12	18	2	AAAG
13	13	6727	AAAG
14	14	3699	AAAG
14	13	8	AAAG
15	15	3858	AAAG
15	17	6	AAAG
15	13	1	AAAG
16	16	1244	AAAG
17	17	750	AAAG
17	13	1	AAAG
18	18	380	AAAG
18	20	5	AAAG
18	14	1	AAAG
19	19	1164	AAAG
19	15	1	AAAG
20	20	153	AAAG
21	21	186	AAAG
22	22	115	AAAG
23	23	321	AAAG
23	19	1	AAAG
24	24	82	AAAG
25	25	89	AAAG
26	26	26	AAAG
26	13	3	AAAG
27	27	64	AAAG
28	28	36	AAAG
29	29	32	AAAG
31	31	31	AAAG
33	33	19	AAAG
35	35	10	AAAG
36	36	11	AAAG
38	38	16	AAAG
41	41	5	AAAG
12	12	23143	AAAT
13	13	10045	AAAT
14	14	6815	AAAT
15	15	8439	AAAT
16	16	3102	AAAT
16	12	2	AAAT
17	17	2018	AAAT
17	13	2	AAAT
18	18	2044	AAAT
19	19	2955	AAAT
19	15	1	AAAT
19	14	1	AAAT
20	20	909	AAAT
21	21	711	AAAT
21	17	2	AAAT
22	22	500	AAAT
22	18	2	AAAT
23	23	993	AAAT
23	19	3	AAAT
24	24	382	AAAT
24	20	3	AAAT
25	25	190	AAAT
26	26	185	AAAT
26	22	1	AAAT
27	27	281	AAAT
27	23	2	AAAT
28	28	165	AAAT
28	24	2	AAAT
29	29	48	AAAT
30	30	46	AAAT
31	31	101	AAAT
32	32	28	AAAT
33	33	19	AAAT
34	34	24	AAAT
34	30	1	AAAT
35	35	41	AAAT
35	31	2	AAAT
36	36	16	AAAT
37	37	6	AAAT
38	38	5	AAAT
39	39	20	AAAT
39	35	1	AAAT
40	40	5	AAAT
41	41	10	AAAT
42	42	6	AAAT
45	45	6	AAAT
12	12	1468	AACC
13	13	590	AACC
14	14	318	AACC
15	15	163	AACC
16	16	102	AACC
17	17	106	AACC
18	18	18	AACC
19	19	34	AACC
20	20	7	AACC
22	22	7	AACC
23	23	13	AACC
24	24	16	AACC
25	25	9	AACC
31	31	9	AACC
12	12	214	AACG
13	13	135	AACG
14	14	39	AACG
15	15	45	AACG
12	12	522	AACT
13	13	142	AACT
14	14	143	AACT
15	15	88	AACT
16	16	16	AACT
17	17	51	AACT
18	18	7	AACT
20	20	21	AACT
21	21	27	AACT
23	23	7	AACT
24	24	11	AACT
30	30	5	AACT
12	12	346	AAGC
13	13	83	AAGC
14	14	60	AAGC
15	15	40	AAGC
16	16	21	AAGC
18	18	9	AAGC
19	19	7	AAGC
12	12	4943	AAGG
13	13	2714	AAGG
14	14	1385	AAGG
14	15	3	AAGG
15	15	949	AAGG
16	16	612	AAGG
16	14	4	AAGG
17	17	331	AAGG
18	18	362	AAGG
19	19	204	AAGG
20	20	138	AAGG
21	21	149	AAGG
22	22	68	AAGG
23	23	49	AAGG
24	24	27	AAGG
25	25	44	AAGG
26	26	8	AAGG
27	27	14	AAGG
28	28	14	AAGG
29	29	14	AAGG
30	30	12	AAGG
31	31	23	AAGG
34	34	11	AAGG
43	43	6	AAGG
12	12	2676	AAGT
13	13	1438	AAGT
14	14	940	AAGT
15	15	649	AAGT
16	16	305	AAGT
17	17	291	AAGT
18	18	181	AAGT
19	19	55	AAGT
20	20	73	AAGT
21	21	8	AAGT
22	22	43	AAGT
22	26	1	AAGT
23	23	32	AAGT
23	19	1	AAGT
24	24	18	AAGT
25	25	19	AAGT
26	26	8	AAGT
27	27	12	AAGT
29	29	18	AAGT
30	30	12	AAGT
31	31	12	AAGT
32	32	11	AAGT
33	33	35	AAGT
34	34	9	AAGT
35	35	6	AAGT
12	12	594	AATC
13	13	205	AATC
14	14	88	AATC
15	15	112	AATC
16	16	20	AATC
17	17	81	AATC
18	18	23	AATC
21	21	13	AATC
22	22	8	AATC
24	24	19	AATC
26	26	7	AATC
28	28	9	AATC
33	33	6	AATC
12	12	2293	AATG
13	13	1226	AATG
14	14	678	AATG
15	15	455	AATG
16	16	222	AATG
17	17	211	AATG
18	18	104	AATG
19	19	79	AATG
20	20	40	AATG
21	21	33	AATG
22	22	73	AATG
23	23	24	AATG
24	24	16	AATG
25	25	18	AATG
26	26	15	AATG
27	27	22	AATG
27	23	1	AATG
28	28	5	AATG
32	32	17	AATG
33	33	16	AATG
12	12	2633	AATT
13	13	1086	AATT
14	14	1052	AATT
15	15	386	AATT
16	16	393	AATT
17	17	98	AATT
18	18	104	AATT
19	19	105	AATT
20	20	34	AATT
21	21	12	AATT
22	22	20	AATT
25	25	18	AATT
26	26	25	AATT
27	27	7	AATT
29	29	7	AATT
35	35	12	AATT
12	12	1406	ACAG
13	13	964	ACAG
14	14	300	ACAG
15	15	130	ACAG
16	16	102	ACAG
17	17	49	ACAG
18	18	30	ACAG
19	19	88	ACAG
20	20	5	ACAG
23	23	5	ACAG
12	12	4868	ACAT
12	15	4	ACAT
13	13	3216	ACAT
14	14	957	ACAT
15	15	1052	ACAT
16	16	588	ACAT
17	17	422	ACAT
18	18	239	ACAT
19	19	238	ACAT
19	15	1	ACAT
20	20	25	ACAT
21	21	79	ACAT
22	22	20	ACAT
23	23	38	ACAT
27	27	42	ACAT
29	29	18	ACAT
31	31	5	ACAT
32	32	5	ACAT
35	35	6	ACAT
36	36	9	ACAT
41	41	14	ACAT
44	44	8	ACAT
44	40	1	ACAT
50	50	12	ACAT
12	12	833	ACCC
13	13	345	ACCC
14	14	190	ACCC
15	15	60	ACCC
16	16	12	ACCC
17	17	15	ACCC
19	19	8	ACCG
12	12	416	ACCT
13	13	123	ACCT
14	14	140	ACCT
15	15	69	ACCT
16	16	41	ACCT
17	17	45	ACCT
19	19	18	ACCT
20	20	27	ACCT
21	21	19	ACCT
22	22	6	ACCT
27	27	13	ACCT
28	28	7	ACCT
29	29	9	ACCT
30	30	7	ACCT
34	34	6	ACCT
45	45	5	ACCT
12	12	84	ACGC
13	13	52	ACGC
15	15	63	ACGC
12	12	433	ACGG
13	13	163	ACGG
14	14	38	ACGG
15	15	44	ACGG
16	16	7	ACGG
17	17	11	ACGG
19	19	6	ACGG
25	25	10	ACGG
12	12	1119	ACGT
13	13	509	ACGT
14	14	338	ACGT
15	15	16	ACGT
16	16	66	ACGT
17	17	7	ACGT
19	19	27	ACGT
12	12	2211	ACTC
13	13	685	ACTC
14	14	188	ACTC
15	15	151	ACTC
16	16	91	ACTC
18	18	17	ACTC
19	19	24	ACTC
20	20	23	ACTC
21	21	13	ACTC
23	23	19	ACTC
45	45	8	ACTC
12	12	161	ACTG
13	13	69	ACTG
14	14	7	ACTG
15	15	14	ACTG
16	16	15	ACTG
12	12	3118	AGAT
13	13	1216	AGAT
14	14	1084	AGAT
15	15	869	AGAT
16	16	508	AGAT
17	17	322	AGAT
18	18	159	AGAT
19	19	258	AGAT
20	20	63	AGAT
21	21	84	AGAT
22	22	69	AGAT
22	14	6	AGAT
23	23	112	AGAT
24	24	107	AGAT
25	25	36	AGAT
26	26	113	AGAT
27	27	42	AGAT
28	28	58	AGAT
29	29	37	AGAT
30	30	16	AGAT
31	31	32	AGAT
32	32	24	AGAT
33	33	10	AGAT
34	34	43	AGAT
35	35	6	AGAT
36	36	13	AGAT
36	32	1	AGAT
37	37	35	AGAT
38	38	34	AGAT
39	39	20	AGAT
39	35	2	AGAT
40	40	27	AGAT
41	41	29	AGAT
42	42	30	AGAT
43	43	87	AGAT
44	44	67	AGAT
45	45	20	AGAT
46	46	15	AGAT
47	47	28	AGAT
48	48	26	AGAT
49	49	13	AGAT
50	50	11	AGAT
52	52	5	AGAT
54	54	6	AGAT
12	12	236	AGCC
13	13	109	AGCC
14	14	17	AGCC
15	15	14	AGCC
16	16	8	AGCC
18	18	12	AGCC
21	21	18	AGCC
23	23	13	AGCC
12	12	23	AGCG
13	13	19	AGCG
18	18	9	AGCG
12	12	272	AGCT
13	13	89	AGCT
14	14	108	AGCT
15	15	49	AGCT
16	16	19	AGCT
17	17	19	AGCT
18	18	19	AGCT
19	19	44	AGCT
22	22	12	AGCT
27	27	16	AGCT
12	12	87	AGGC
13	13	19	AGGC
14	14	16	AGGC
18	18	7	AGGC
12	12	3610	AGGG
13	13	1980	AGGG
14	14	1095	AGGG
15	15	624	AGGG
16	16	159	AGGG
17	17	59	AGGG
18	18	43	AGGG
19	19	60	AGGG
20	20	49	AGGG
21	21	12	AGGG
23	23	10	AGGG
12	12	531	ATCC
13	13	323	ATCC
14	14	221	ATCC
15	15	58	ATCC
16	16	78	ATCC
17	17	38	ATCC
18	18	12	ATCC
19	19	19	ATCC
20	20	17	ATCC
21	21	44	ATCC
22	22	12	ATCC
23	23	39	ATCC
24	24	11	ATCC
25	25	12	ATCC
27	27	10	ATCC
32	32	6	ATCC
39	39	8	ATCC
40	40	6	ATCC
48	48	7	ATCC
12	12	272	ATCG
13	13	89	ATCG
14	14	108	ATCG
15	15	49	ATCG
16	16	19	ATCG
17	17	19	ATCG
18	18	19	ATCG
19	19	44	ATCG
22	22	12	ATCG
27	27	16	ATCG
12	12	1119	ATGC
13	13	509	ATGC
14	14	338	ATGC
15	15	16	ATGC
16	16	66	ATGC
17	17	7	ATGC
19	19	27	ATGC
12	12	13	CCCG
12	12	178	AGTC
13	13	77	AGTC
14	14	13	AGTC
15	15	12	AGTC