diff Galaxy-Workflow-Estimate_minimum_informative_read_depth.ga @ 6:d75894f5d61b draft

Uploaded

--- a/Galaxy-Workflow-Estimate_minimum_informative_read_depth.ga	Sat Aug 22 12:13:20 2015 -0400
+++ b/Galaxy-Workflow-Estimate_minimum_informative_read_depth.ga	Sat Aug 22 12:13:34 2015 -0400
@@ -72,7 +72,7 @@
                 }
             }, 
             "inputs": [], 
-            "name": "Generate all possible combination of read profile", 
+            "name": "Generate all possible combination of STR length profile", 
             "outputs": [
                 {
                     "name": "output", 
@@ -80,12 +80,18 @@
                 }
             ], 
             "position": {
-                "left": 653.5, 
-                "top": 203
+                "left": 631.5, 
+                "top": 202.5
             }, 
-            "post_job_actions": {}, 
+            "post_job_actions": {
+                "HideDatasetActionoutput": {
+                    "action_arguments": {}, 
+                    "action_type": "HideDatasetAction", 
+                    "output_name": "output"
+                }
+            }, 
             "tool_errors": null, 
-            "tool_id": "toolshed.g2.bx.psu.edu/repos/arkarachai-fungtammasan/microsatellite_ngs/Profilegenerator/2.0.0", 
+            "tool_id": "toolshed.g2.bx.psu.edu/repos/arkarachai-fungtammasan/str_fm/Profilegenerator/2.0.0", 
             "tool_state": "{\"error_profile\": \"null\", \"MOTIF\": \"\\\"A\\\"\", \"__page__\": 0, \"__rerun_remap_job_id__\": null, \"minprob\": \"\\\"1e-08\\\"\", \"Maxdepth\": \"\\\"30\\\"\"}", 
             "tool_version": "2.0.0", 
             "type": "tool", 
@@ -140,7 +146,7 @@
                 }
             }, 
             "inputs": [], 
-            "name": "Correct genotype for microsatellite errors", 
+            "name": "Correct genotype for STR errors", 
             "outputs": [
                 {
                     "name": "microsat_corrected", 
@@ -148,8 +154,8 @@
                 }
             ], 
             "position": {
-                "left": 661, 
-                "top": 427
+                "left": 658, 
+                "top": 436.5
             }, 
             "post_job_actions": {
                 "HideDatasetActionmicrosat_corrected": {
@@ -159,7 +165,7 @@
                 }
             }, 
             "tool_errors": null, 
-            "tool_id": "toolshed.g2.bx.psu.edu/repos/arkarachai-fungtammasan/microsatellite_ngs/GenotypeSTR/2.0.0", 
+            "tool_id": "toolshed.g2.bx.psu.edu/repos/arkarachai-fungtammasan/str_fm/GenotypeSTR/2.0.0", 
             "tool_state": "{\"microsat_raw\": \"null\", \"__page__\": 0, \"__rerun_remap_job_id__\": null, \"microsat_error_profile\": \"null\", \"expectedminorallele\": \"\\\"0.5\\\"\"}", 
             "tool_version": "2.0.0", 
             "type": "tool", 
@@ -257,8 +263,8 @@
                 }
             ], 
             "position": {
-                "left": 708.5, 
-                "top": 913
+                "left": 720, 
+                "top": 897.5
             }, 
             "post_job_actions": {
                 "HideDatasetActionmicrosat_corrected": {
@@ -268,7 +274,7 @@
                 }
             }, 
             "tool_errors": null, 
-            "tool_id": "toolshed.g2.bx.psu.edu/repos/arkarachai-fungtammasan/microsatellite_ngs/heteroprob/2.0.0", 
+            "tool_id": "toolshed.g2.bx.psu.edu/repos/arkarachai-fungtammasan/str_fm/heteroprob/2.0.0", 
             "tool_state": "{\"microsat_raw\": \"null\", \"__page__\": 0, \"__rerun_remap_job_id__\": null, \"microsat_error_profile\": \"null\", \"expectedminorallele\": \"\\\"0.5\\\"\"}", 
             "tool_version": "2.0.0", 
             "type": "tool", 
@@ -319,7 +325,7 @@
                 }
             }, 
             "inputs": [], 
-            "name": "Combine probability to generate read profile ", 
+            "name": "Combine read profile probabilities ", 
             "outputs": [
                 {
                     "name": "output", 
@@ -327,12 +333,12 @@
                 }
             ], 
             "position": {
-                "left": 722, 
-                "top": 1264
+                "left": 737.5, 
+                "top": 1273.5
             }, 
             "post_job_actions": {}, 
             "tool_errors": null, 
-            "tool_id": "toolshed.g2.bx.psu.edu/repos/arkarachai-fungtammasan/microsatellite_ngs/combineproballelecom/2.0.0", 
+            "tool_id": "toolshed.g2.bx.psu.edu/repos/arkarachai-fungtammasan/str_fm/combineproballelecom/2.0.0", 
             "tool_state": "{\"input\": \"null\", \"__rerun_remap_job_id__\": null, \"__page__\": 0}", 
             "tool_version": "2.0.0", 
             "type": "tool",