Mercurial > repos > arkarachai-fungtammasan > str_fm
view Galaxy-Workflow-TR_genome_profiling.ga @ 2:d5ed5c2e25c3 draft
Uploaded
author | arkarachai-fungtammasan |
---|---|
date | Wed, 22 Apr 2015 12:48:40 -0400 |
parents | 07588b899c13 |
children | 29924ae65c45 |
line wrap: on
line source
{ "a_galaxy_workflow": "true", "annotation": "", "format-version": "0.1", "name": "TR genome profiling", "steps": { "0": { "annotation": "", "id": 0, "input_connections": {}, "inputs": [ { "description": "", "name": "fasta reference file" } ], "name": "Input dataset", "outputs": [], "position": { "left": 200, "top": 250 }, "tool_errors": null, "tool_id": null, "tool_state": "{\"name\": \"fasta reference file\"}", "tool_version": null, "type": "data_input", "user_outputs": [] }, "1": { "annotation": "", "id": 1, "input_connections": { "filePath": { "id": 0, "output_name": "output" } }, "inputs": [], "name": "Microsatellite detection", "outputs": [ { "name": "stdout", "type": "tabular" } ], "position": { "left": 430, "top": 250 }, "post_job_actions": { "ChangeDatatypeActionstdout": { "action_arguments": { "newtype": "tabular" }, "action_type": "ChangeDatatypeAction", "output_name": "stdout" }, "HideDatasetActionstdout": { "action_arguments": {}, "action_type": "HideDatasetAction", "output_name": "stdout" } }, "tool_errors": null, "tool_id": "toolshed.g2.bx.psu.edu/repos/arkarachai-fungtammasan/microsatellite_ngs/microsatellite/1.0.0", "tool_state": "{\"__page__\": 0, \"flankSetting\": \"{\\\"noflankdisplay\\\": \\\"False\\\", \\\"flankdisplay\\\": \\\"0\\\", \\\"__current_case__\\\": 0}\", \"filePath\": \"null\", \"minlength\": \"\\\"5\\\"\", \"hammingThreshold\": \"\\\"0\\\"\", \"period\": \"\\\"1\\\"\", \"surfix\": \"\\\"0\\\"\", \"prefix\": \"\\\"0\\\"\", \"__rerun_remap_job_id__\": null, \"inputFileSource\": \"{\\\"inputFileType\\\": \\\"fasta\\\", \\\"__current_case__\\\": 2}\", \"partialmotifs\": \"\\\"True\\\"\", \"multipleruns\": \"\\\"True\\\"\"}", "tool_version": "1.0.0", "type": "tool", "user_outputs": [] }, "2": { "annotation": "", "id": 2, "input_connections": { "input": { "id": 1, "output_name": "stdout" } }, "inputs": [], "name": "Compute", "outputs": [ { "name": "out_file1", "type": "input" } ], "position": { "left": 688, "top": 250 }, "post_job_actions": { "HideDatasetActionout_file1": { "action_arguments": {}, "action_type": "HideDatasetAction", "output_name": "out_file1" } }, "tool_errors": null, "tool_id": "Add_a_column1", "tool_state": "{\"input\": \"null\", \"__rerun_remap_job_id__\": null, \"cond\": \"\\\"int(c1+c2)\\\"\", \"round\": \"\\\"no\\\"\", \"__page__\": 0}", "tool_version": "1.1.0", "type": "tool", "user_outputs": [] }, "3": { "annotation": "", "id": 3, "input_connections": { "input": { "id": 2, "output_name": "out_file1" } }, "inputs": [], "name": "Compute", "outputs": [ { "name": "out_file1", "type": "input" } ], "position": { "left": 916, "top": 250 }, "post_job_actions": { "HideDatasetActionout_file1": { "action_arguments": {}, "action_type": "HideDatasetAction", "output_name": "out_file1" } }, "tool_errors": null, "tool_id": "Add_a_column1", "tool_state": "{\"input\": \"null\", \"__rerun_remap_job_id__\": null, \"cond\": \"\\\"len(c4)\\\"\", \"round\": \"\\\"no\\\"\", \"__page__\": 0}", "tool_version": "1.1.0", "type": "tool", "user_outputs": [] }, "4": { "annotation": "", "id": 4, "input_connections": { "input": { "id": 3, "output_name": "out_file1" } }, "inputs": [], "name": "Cut", "outputs": [ { "name": "out_file1", "type": "tabular" } ], "position": { "left": 1144, "top": 250 }, "post_job_actions": { "ChangeDatatypeActionout_file1": { "action_arguments": { "newtype": "interval" }, "action_type": "ChangeDatatypeAction", "output_name": "out_file1" }, "ColumnSetActionout_file1": { "action_arguments": { "chromCol": "1", "endCol": "3", "nameCol": "", "startCol": "2", "strandCol": "" }, "action_type": "ColumnSetAction", "output_name": "out_file1" } }, "tool_errors": null, "tool_id": "Cut1", "tool_state": "{\"columnList\": \"\\\"c6,c2,c9,c4,c1,c10\\\"\", \"input\": \"null\", \"delimiter\": \"\\\"T\\\"\", \"__rerun_remap_job_id__\": null, \"__page__\": 0}", "tool_version": "1.0.2", "type": "tool", "user_outputs": [] } } }