# HG changeset patch
# User artbio
# Date 1508109269 14400
# Node ID ae9ea0488850473fbd8b8fb192ed774e9634ce7c
# Parent  2a1a2bc6ae8ba5622e308ca91bf3c450d8709a92
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/bamparse commit 9aec415b3fcc66bf3ed2aad43fd70b57bfe2fb18

diff -r 2a1a2bc6ae8b -r ae9ea0488850 bamparse.py
--- a/bamparse.py	Fri Oct 13 02:59:36 2017 -0400
+++ b/bamparse.py	Sun Oct 15 19:14:29 2017 -0400
@@ -62,13 +62,13 @@
     countlists = []
     for dic in diclist:
         counts = sorted(dic.items())
-        counts = [j for (i,j) in counts]
+        counts = [j for (i, j) in counts]
         countlists.append(counts)
     if number == "unique":
         out = open("outputdir/table.tabular", "w")
         out.write("gene\t%s\n" % "\t".join(labels))
         for countline in zip(sorted(diclist[0]), *countlists):
-            line = [ str(i) for i in countline]
+            line = [str(i) for i in countline]
             out.write("%s\n" % "\t".join(line))
         out.close()
     else:
@@ -80,7 +80,6 @@
             out.close()
 
 
-
 def main(alignments, labels, polarity, output, number):
     diclist = []
     for file in alignments:
diff -r 2a1a2bc6ae8b -r ae9ea0488850 bamparse.xml
--- a/bamparse.xml	Fri Oct 13 02:59:36 2017 -0400
+++ b/bamparse.xml	Sun Oct 15 19:14:29 2017 -0400
@@ -1,4 +1,4 @@
-<tool id="bamparse" name="Count alignments" version="2.0.0">
+<tool id="bamparse" name="Count alignments" version="2.0.1">
     <description>in a BAM file</description>
     <requirements>
 	        <requirement type="package" version="1.1.2">bowtie</requirement>