annotate bigwigtobedgraph.xml @ 1:f0249c5ab93c draft default tip

planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/main/tools/bigwig_to_bedgraph commit 8a0d8518df4b1860e7feee9f1718a933f0a25348
author artbio
date Wed, 11 Oct 2023 09:34:14 +0000
parents 72fc45aeb17c
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f0249c5ab93c planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/main/tools/bigwig_to_bedgraph commit 8a0d8518df4b1860e7feee9f1718a933f0a25348
artbio
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1 <tool id="bigwig_to_bedgraph" name="BigWig to BedGraph" version="377+galaxy1">
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72fc45aeb17c "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/bigwig_to_bedgraph commit 09f44cfa1b2b1404b23aaa00a4b7b7e6e998af63"
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2 <description>converter</description>
72fc45aeb17c "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/bigwig_to_bedgraph commit 09f44cfa1b2b1404b23aaa00a4b7b7e6e998af63"
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3 <requirements>
1
f0249c5ab93c planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/main/tools/bigwig_to_bedgraph commit 8a0d8518df4b1860e7feee9f1718a933f0a25348
artbio
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4 <requirement type="package" version="377">ucsc-bigwigtobedgraph</requirement>
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72fc45aeb17c "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/bigwig_to_bedgraph commit 09f44cfa1b2b1404b23aaa00a4b7b7e6e998af63"
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5 </requirements>
72fc45aeb17c "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/bigwig_to_bedgraph commit 09f44cfa1b2b1404b23aaa00a4b7b7e6e998af63"
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6 <stdio>
72fc45aeb17c "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/bigwig_to_bedgraph commit 09f44cfa1b2b1404b23aaa00a4b7b7e6e998af63"
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7 <exit_code range="1:" level="fatal" description="Tool exception" />
72fc45aeb17c "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/bigwig_to_bedgraph commit 09f44cfa1b2b1404b23aaa00a4b7b7e6e998af63"
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8 </stdio>
72fc45aeb17c "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/bigwig_to_bedgraph commit 09f44cfa1b2b1404b23aaa00a4b7b7e6e998af63"
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9 <command detect_errors="exit_code"><![CDATA[
72fc45aeb17c "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/bigwig_to_bedgraph commit 09f44cfa1b2b1404b23aaa00a4b7b7e6e998af63"
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10 bigWigToBedGraph $input $output
72fc45aeb17c "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/bigwig_to_bedgraph commit 09f44cfa1b2b1404b23aaa00a4b7b7e6e998af63"
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11 ]]></command>
72fc45aeb17c "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/bigwig_to_bedgraph commit 09f44cfa1b2b1404b23aaa00a4b7b7e6e998af63"
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12 <inputs>
72fc45aeb17c "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/bigwig_to_bedgraph commit 09f44cfa1b2b1404b23aaa00a4b7b7e6e998af63"
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13 <param name="input" format="bigwig" type="data" label="BigWig file to convert" />
72fc45aeb17c "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/bigwig_to_bedgraph commit 09f44cfa1b2b1404b23aaa00a4b7b7e6e998af63"
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14 </inputs>
72fc45aeb17c "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/bigwig_to_bedgraph commit 09f44cfa1b2b1404b23aaa00a4b7b7e6e998af63"
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15 <outputs>
72fc45aeb17c "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/bigwig_to_bedgraph commit 09f44cfa1b2b1404b23aaa00a4b7b7e6e998af63"
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16 <data format="bedgraph" name="output" label="Convert ${on_string} in BedGraph" />
72fc45aeb17c "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/bigwig_to_bedgraph commit 09f44cfa1b2b1404b23aaa00a4b7b7e6e998af63"
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17 </outputs>
72fc45aeb17c "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/bigwig_to_bedgraph commit 09f44cfa1b2b1404b23aaa00a4b7b7e6e998af63"
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18 <tests>
72fc45aeb17c "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/bigwig_to_bedgraph commit 09f44cfa1b2b1404b23aaa00a4b7b7e6e998af63"
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19 <test>
72fc45aeb17c "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/bigwig_to_bedgraph commit 09f44cfa1b2b1404b23aaa00a4b7b7e6e998af63"
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20 <param name="input" value="1.bigwig" />
72fc45aeb17c "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/bigwig_to_bedgraph commit 09f44cfa1b2b1404b23aaa00a4b7b7e6e998af63"
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21 <output name="output" file="1.bedgraph" />
72fc45aeb17c "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/bigwig_to_bedgraph commit 09f44cfa1b2b1404b23aaa00a4b7b7e6e998af63"
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22 </test>
72fc45aeb17c "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/bigwig_to_bedgraph commit 09f44cfa1b2b1404b23aaa00a4b7b7e6e998af63"
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23 </tests>
72fc45aeb17c "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/bigwig_to_bedgraph commit 09f44cfa1b2b1404b23aaa00a4b7b7e6e998af63"
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24 <help><![CDATA[
72fc45aeb17c "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/bigwig_to_bedgraph commit 09f44cfa1b2b1404b23aaa00a4b7b7e6e998af63"
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25
72fc45aeb17c "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/bigwig_to_bedgraph commit 09f44cfa1b2b1404b23aaa00a4b7b7e6e998af63"
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26 bigWigToBedGraph - Convert from bigWig to bedGraph format.
72fc45aeb17c "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/bigwig_to_bedgraph commit 09f44cfa1b2b1404b23aaa00a4b7b7e6e998af63"
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27
72fc45aeb17c "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/bigwig_to_bedgraph commit 09f44cfa1b2b1404b23aaa00a4b7b7e6e998af63"
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28 usage : bigWigToBedGraph in.bigWig out.bedGraph
72fc45aeb17c "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/bigwig_to_bedgraph commit 09f44cfa1b2b1404b23aaa00a4b7b7e6e998af63"
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72fc45aeb17c "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/bigwig_to_bedgraph commit 09f44cfa1b2b1404b23aaa00a4b7b7e6e998af63"
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30 ]]></help>
72fc45aeb17c "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/bigwig_to_bedgraph commit 09f44cfa1b2b1404b23aaa00a4b7b7e6e998af63"
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31 <citations>
72fc45aeb17c "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/bigwig_to_bedgraph commit 09f44cfa1b2b1404b23aaa00a4b7b7e6e998af63"
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32 <citation type="doi">10.1093/bioinformatics/btq351</citation>
72fc45aeb17c "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/bigwig_to_bedgraph commit 09f44cfa1b2b1404b23aaa00a4b7b7e6e998af63"
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33 </citations>
72fc45aeb17c "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/bigwig_to_bedgraph commit 09f44cfa1b2b1404b23aaa00a4b7b7e6e998af63"
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34 </tool>