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planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/main/tools/bigwig_to_bedgraph commit 8a0d8518df4b1860e7feee9f1718a933f0a25348
author artbio
date Wed, 11 Oct 2023 09:34:14 +0000
parents 72fc45aeb17c
children
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<tool id="bigwig_to_bedgraph" name="BigWig to BedGraph" version="377+galaxy1">
    <description>converter</description>
    <requirements>
        <requirement type="package" version="377">ucsc-bigwigtobedgraph</requirement>
    </requirements>
    <stdio>
        <exit_code range="1:" level="fatal" description="Tool exception" />
    </stdio>
    <command detect_errors="exit_code"><![CDATA[
        bigWigToBedGraph $input $output
    ]]></command>
    <inputs>
        <param name="input" format="bigwig" type="data" label="BigWig file to convert" />
    </inputs>
    <outputs>
        <data format="bedgraph" name="output" label="Convert ${on_string} in BedGraph" />
    </outputs>
    <tests>
        <test>
	    <param name="input" value="1.bigwig" />
	    <output name="output" file="1.bedgraph" />	  
        </test>
     </tests>
     <help><![CDATA[

bigWigToBedGraph - Convert from bigWig to bedGraph format.

usage : bigWigToBedGraph in.bigWig out.bedGraph

    ]]></help>
    <citations>
        <citation type="doi">10.1093/bioinformatics/btq351</citation>
    </citations>
</tool>