comparison bigwig_to_wig.xml @ 0:ee2fbee916f7 draft

planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/bigwig_to_wig commit 5baa8e0a6a2bf65e58972c19b636ff4789c25b56

0:ee2fbee916f7

<tool id="bigwig_to_wig" name="BigWig to Wig" version="2.0.0">
    <description>converter</description>
    <macros>
        <import>macros.xml</import>
    </macros>
    <expand macro="requirements"/>
    <stdio>
        <exit_code range="1:" level="fatal" description="Tool exception" />
    </stdio>
    <command detect_errors="exit_code"><![CDATA[
        sh $__tool_directory__/bigwig_to_wig.sh -f $input -b $bin_size -l $mylab > $output
    ]]></command>
  <inputs>
      <param name="input" format="bigwig" type="data" label="BigWig file to convert" />
      <param name="bin_size" size="4" type="integer" value="500" label="Bin size" help="Choose the resolution (in bp) of your wig file. Must be an even integer > 100." />
      <param name="mylab" type="text" value="wiggle_file" label="Output file prefix" help="" />
  </inputs>
  <outputs>
      <data format="wig" name="output" label="${mylab}_density_bin${bin_size}.wig" />
  </outputs>
  <tests>
      <test>
	      <param name="input" value="1.bigwig" />
	      <param name="bin_size" value="500" />
	      <param name="mylab" value="wiggle_file" />
	      <output name="output" file="1.wig" />	  
      </test>
      <test>
	      <param name="input" value="2.bigwig" />
	      <param name="bin_size" value="2000" />
	      <param name="mylab" value="wiggle_file" />
	      <output name="output" file="2.wig" />	  
      </test>
    </tests>
    <help><![CDATA[

@HELP_CONTENT@

@TOOL_ATTRIBUTION@

    ]]></help>
    <expand macro="citation"/>
</tool>