comparison blast_unmatched.py @ 4:caa54ff096c8 draft

"planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/blast_unmatched commit 3dcf4e7314dd6a4fefcd721ac58c8130dd1da2a1"

3:fffdb903f2d1

    """
    Compares matched queries to query fasta file and print unmatched to ouput
    """
    output_file_handle = open(output_file, 'w')
    unmatched = False
    end = re.compile(".+\W$")
    with open(fasta_file, 'r') as infile:
        for line in infile:
            if line.startswith('>'):
                subline = line[1:].rstrip()  # qid are 100chars long in blast
                if end.match(subline) is not None:

4:caa54ff096c8

    """
    Compares matched queries to query fasta file and print unmatched to ouput
    """
    output_file_handle = open(output_file, 'w')
    unmatched = False
    end = re.compile(r".+\W$")
    with open(fasta_file, 'r') as infile:
        for line in infile:
            if line.startswith('>'):
                subline = line[1:].rstrip()  # qid are 100chars long in blast
                if end.match(subline) is not None: