Mercurial > repos > artbio > cap3
comparison test-data/cap3stdout.txt @ 0:d76a0d8a9eac draft
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/cap3 commit 9d6ba79f91bdf48dc01c09c088c63f5ea60d137a
author | artbio |
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date | Sat, 02 Sep 2017 07:09:11 -0400 |
parents | |
children |
comparison
equal
deleted
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-1:000000000000 | 0:d76a0d8a9eac |
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1 Number of segment pairs = 342; number of pairwise comparisons = 14 | |
2 '+' means given segment; '-' means reverse complement | |
3 | |
4 Overlaps Containments No. of Constraints Supporting Overlap | |
5 | |
6 ******************* Contig 1 ******************** | |
7 gi|225356593|gb|FJ150422.1|_Drosophila_A_virus_iso+ | |
8 gi|225356593|gb|FJ150422.1|_Drosophila_A_virus_iso+ is in gi|225356593|gb|FJ150422.1|_Drosophila_A_virus_iso+ | |
9 gi|225356593|gb|FJ150422.1|_Drosophila_A_virus_iso+ is in gi|225356593|gb|FJ150422.1|_Drosophila_A_virus_iso+ | |
10 gi|225356593|gb|FJ150422.1|_Drosophila_A_virus_iso+ | |
11 gi|225356593|gb|FJ150422.1|_Drosophila_A_virus_iso+ is in gi|225356593|gb|FJ150422.1|_Drosophila_A_virus_iso+ | |
12 gi|225356593|gb|FJ150422.1|_Drosophila_A_virus_iso+ is in gi|225356593|gb|FJ150422.1|_Drosophila_A_virus_iso+ | |
13 gi|225356593|gb|FJ150422.1|_Drosophila_A_virus_iso+ | |
14 ******************* Contig 2 ******************** | |
15 gi|225356593|gb|FJ150422.1|_Drosophila_A_virus_iso+ | |
16 gi|225356593|gb|FJ150422.1|_Drosophila_A_virus_iso+ is in gi|225356593|gb|FJ150422.1|_Drosophila_A_virus_iso+ | |
17 ******************* Contig 3 ******************** | |
18 gi|225356593|gb|FJ150422.1|_Drosophila_A_virus_iso+ | |
19 gi|225356593|gb|FJ150422.1|_Drosophila_A_virus_iso+ | |
20 ******************* Contig 4 ******************** | |
21 gi|225356593|gb|FJ150422.1|_Drosophila_A_virus_iso+ | |
22 gi|225356593|gb|FJ150422.1|_Drosophila_A_virus_iso+ | |
23 | |
24 DETAILED DISPLAY OF CONTIGS | |
25 ******************* Contig 1 ******************** | |
26 . : . : . : . : . : . : | |
27 gi|225356593|gb|FJ15+ GTTGCATATTCAACCTGCCGAGCCCAGGAAGACTCAGGCGGGGGAGGCACTACATTAGGG | |
28 gi|225356593|gb|FJ15+ GTTGCATATTCAACCTGCCGAGCCCAGGAAGACTCAGGCGGGGGAGGCACTACATTAGGG | |
29 gi|225356593|gb|FJ15+ GTTGCATATTCAACCTGCCGAGCCCAGGAAGACTCAGGCGGGGGAGGCACTACATTAGGG | |
30 ____________________________________________________________ | |
31 consensus GTTGCATATTCAACCTGCCGAGCCCAGGAAGACTCAGGCGGGGGAGGCACTACATTAGGG | |
32 | |
33 . : . : . : . : . : . : | |
34 gi|225356593|gb|FJ15+ GTCGCAAAGCTAGACTTCTTGTATGGGATGTTGTTAACCTCCAAAATAGCTGCACAGATG | |
35 gi|225356593|gb|FJ15+ GTCGCAAAGCTAGACTTCTTGTATGGGATGTTGTTAACCTCCAAAATAGCTGCACAGATG | |
36 gi|225356593|gb|FJ15+ GTCGCAAAGCTAGACTTCTTGTATGGGATGTTGTTAACCTCCAAAATAGCTGCACAGATG | |
37 ____________________________________________________________ | |
38 consensus GTCGCAAAGCTAGACTTCTTGTATGGGATGTTGTTAACCTCCAAAATAGCTGCACAGATG | |
39 | |
40 . : . : . : . : . : . : | |
41 gi|225356593|gb|FJ15+ TATTCCTTAGCCAGTTTGGCAGAGGAAGACCAGGCTTCTCCCAACAGCTTCACATCCTGG | |
42 gi|225356593|gb|FJ15+ TATTCCTTAGCCAGTTTGGCAGAGGAAGACCAGGCTTCTCCCAACAGCTTCACATCCTGG | |
43 gi|225356593|gb|FJ15+ ACATCCTGG | |
44 gi|225356593|gb|FJ15+ TATTCCTTAGCCAGTTTGGCAGAGGAAGACCAGGCTTCTCCCAACAGCTTCACATCCTGG | |
45 ____________________________________________________________ | |
46 consensus TATTCCTTAGCCAGTTTGGCAGAGGAAGACCAGGCTTCTCCCAACAGCTTCACATCCTGG | |
47 | |
48 . : . : . : . : . : . : | |
49 gi|225356593|gb|FJ15+ GTATGGTGGCTGTGGGCGTAGAGCCTAACTCCAACAGGATTGGCAGCATTTGGCCGTACC | |
50 gi|225356593|gb|FJ15+ GTATGGTGGCTGTGGGC | |
51 gi|225356593|gb|FJ15+ GTATGGTGGCTGTGGGCGTAGAGCCTAACTCCAACAGGATTGGCAGCATTTGGCCGTACC | |
52 gi|225356593|gb|FJ15+ GTATGGTGGCTGTGGGCGTAGAGCCTAACTCCAACAGGATTGGCAGCATTTGGCCGTACC | |
53 ____________________________________________________________ | |
54 consensus GTATGGTGGCTGTGGGCGTAGAGCCTAACTCCAACAGGATTGGCAGCATTTGGCCGTACC | |
55 | |
56 . : . : . : . : . : . : | |
57 gi|225356593|gb|FJ15+ TCAGATATCCATTTAGTGAATCCTGAGAATCTCCCGCTGACCATTGCATGGACATATGCC | |
58 gi|225356593|gb|FJ15+ TCAGATATCCATTTAGTGAATCCTGAGAATCTCCCGCTGACCATTGCATGGACATATGCC | |
59 gi|225356593|gb|FJ15+ TCAGATATCCATTTAGTGAATCCTGAGAATCTCCCGCTGACCATTGCATGGACATATGCC | |
60 ____________________________________________________________ | |
61 consensus TCAGATATCCATTTAGTGAATCCTGAGAATCTCCCGCTGACCATTGCATGGACATATGCC | |
62 | |
63 . : . : . : . : . : . : | |
64 gi|225356593|gb|FJ15+ ATGGCATCCTCTGCTGTATTTATATCGTGGGGAGGTGGATGGAGGTTCGATACTCCTGCA | |
65 gi|225356593|gb|FJ15+ ATGGCATCCTCTGCTGTATTTATATCGTGGGGAGGTGGATGGAGGTTCGATACTCCTGCA | |
66 gi|225356593|gb|FJ15+ ATGGCATCCTCTGCTGTATTTATATCGTGGGGAGGTGGATGGAGGTTCGATACTCCTGCA | |
67 gi|225356593|gb|FJ15+ TACTCCTGCA | |
68 ____________________________________________________________ | |
69 consensus ATGGCATCCTCTGCTGTATTTATATCGTGGGGAGGTGGATGGAGGTTCGATACTCCTGCA | |
70 | |
71 . : . : . : . : . : . : | |
72 gi|225356593|gb|FJ15+ ACGTCCAGGTTAATGAGCTCAGGTTGGGTTTTTAC | |
73 gi|225356593|gb|FJ15+ ACGTCCAGGTTAATGAGCTCAGGTTGGGTTTTTAC | |
74 gi|225356593|gb|FJ15+ ACGTCCAGGTTAATGAGCTCAGGTTGGGTTTTTACAATCTCCCGTCTCAAAGCTGACGTT | |
75 gi|225356593|gb|FJ15+ TTAATGAGCTCAGGTTGGGTTTTTACAATCTCCCGTCTCAAAGCTGACGTT | |
76 gi|225356593|gb|FJ15+ ACGTCCAGATTAATGAGCTCAGGTTGGGTTTTTACAATCTCCCGTCTCAAAGCTGACGTT | |
77 ____________________________________________________________ | |
78 consensus ACGTCCAGGTTAATGAGCTCAGGTTGGGTTTTTACAATCTCCCGTCTCAAAGCTGACGTT | |
79 | |
80 . : . : . : . : . : . : | |
81 gi|225356593|gb|FJ15+ CTGGCTGCAGTAGTCTTATCAATCAGATTACGCTTTTCCTCCATTTCTTCTCTTTGACTG | |
82 gi|225356593|gb|FJ15+ CTGGCTGCAGTAGTCTTATCAATCAGATTACGCTTTTCCTCCATTTCTTCTCTTTGACTG | |
83 gi|225356593|gb|FJ15+ CTGGCTGCAGTAGTCTTATCAATCAGATTACGCTTTTCCTCCATTTCTTCTCTTTGACTG | |
84 ____________________________________________________________ | |
85 consensus CTGGCTGCAGTAGTCTTATCAATCAGATTACGCTTTTCCTCCATTTCTTCTCTTTGACTG | |
86 | |
87 . : . : . : . : . : . : | |
88 gi|225356593|gb|FJ15+ TCCTGCAATGTGGGGAAAGGAGTCACTAGTGGGTATAAGGAAATCAAGTCTCCAAGTTCA | |
89 gi|225356593|gb|FJ15+ TCCTGCAATGTGGGGAAAGGAGTCACTAGTGGGTATAAGGAAATCAAGTCTCCAAGTTCA | |
90 gi|225356593|gb|FJ15+ TCCTGCAATGTGGGGAAAGGAGTCACTAGTGGGTATAAGGAAATCAAGTCTCCAAGTTCA | |
91 ____________________________________________________________ | |
92 consensus TCCTGCAATGTGGGGAAAGGAGTCACTAGTGGGTATAAGGAAATCAAGTCTCCAAGTTCA | |
93 | |
94 . : . : . : . : . : . : | |
95 gi|225356593|gb|FJ15+ TCTCCAGTAGTGAAATAGCCCCCTTTAGCAGCACCCACAACAATTTGGTAGGCACTAGCT | |
96 gi|225356593|gb|FJ15+ TCTCCAGTAGTGAAATAGCCCCCTTTAGCAGCACCCACAACAATTTGGTAGGCACTAGCT | |
97 gi|225356593|gb|FJ15+ TCTCCAGTAGTGAAATAGCCCCCTTTAGCAGCACCCACAACAATTTGGTAGGCACTAGCT | |
98 ____________________________________________________________ | |
99 consensus TCTCCAGTAGTGAAATAGCCCCCTTTAGCAGCACCCACAACAATTTGGTAGGCACTAGCT | |
100 | |
101 . : . : . : . : . : . : | |
102 gi|225356593|gb|FJ15+ CCAACTTTATCGGCAACAGTACCAACCTGAGAAACACCTCCAACTGAGGTAAGCCATCTA | |
103 gi|225356593|gb|FJ15+ CCAACTTTATCGGCAACAGTACCAACCTGAGAAACACCTCCAACTGAGGTAAGCCATCTA | |
104 gi|225356593|gb|FJ15+ CCAACTTTATCGGCAACAGTACCAACCTGAGAAACACCTCCAACTGAGGTAAGCCATCTA | |
105 ____________________________________________________________ | |
106 consensus CCAACTTTATCGGCAACAGTACCAACCTGAGAAACACCTCCAACTGAGGTAAGCCATCTA | |
107 | |
108 . : . : . : . : . : . : | |
109 gi|225356593|gb|FJ15+ ACGACGGCTTGAGCCATATTTGGTAGGAATTTCTCAGGGATGTCACCACTTTCTGTGATC | |
110 gi|225356593|gb|FJ15+ ACGACGGCTTGAGCCATATTTGGTAGGAATTTCTCAGGGATGTCACCACTTTCTGTGATC | |
111 gi|225356593|gb|FJ15+ ACGACGGCTTGAGCCATATTTGGTAGGAATTTCTCAGGGATGTCACCACTTTCTGTGATC | |
112 ____________________________________________________________ | |
113 consensus ACGACGGCTTGAGCCATATTTGGTAGGAATTTCTCAGGGATGTCACCACTTTCTGTGATC | |
114 | |
115 . : . : . : . : . : . : | |
116 gi|225356593|gb|FJ15+ CGAACTACTTTGGGTCTGGGGTTCGGTTCTGAATACTGGACTTGCTGAGGTCTAAGAGCC | |
117 gi|225356593|gb|FJ15+ CGAACTACTTTGGGTCTGGGGTTCGGTTCTGAATACTGGACTTGCTGAGGT | |
118 gi|225356593|gb|FJ15+ CGAACTACTTTGGGTCTGGGGTTCGGTTCTGAATACTGGACTTGCTGAGGT | |
119 gi|225356593|gb|FJ15+ GTTCTGAATACTGGACTTGCTGAGGTCTAAGAGCC | |
120 ____________________________________________________________ | |
121 consensus CGAACTACTTTGGGTCTGGGGTTCGGTTCTGAATACTGGACTTGCTGAGGTCTAAGAGCC | |
122 | |
123 . : . : . : . : . : . : | |
124 gi|225356593|gb|FJ15+ TCAAACACTTTGTACTCATCATTCAGATTCGCCTCAGGAGGAGGAGGGCATCCTACAACC | |
125 gi|225356593|gb|FJ15+ TCAAACACTTTGTACTCATCATTCAGATTCGCCTCAGGAGGAGGAGGGCATCCTACAACC | |
126 ____________________________________________________________ | |
127 consensus TCAAACACTTTGTACTCATCATTCAGATTCGCCTCAGGAGGAGGAGGGCATCCTACAACC | |
128 | |
129 . : . : . : . : . : . : | |
130 gi|225356593|gb|FJ15+ TCCTTGACATCATAGTCGTTGGATTGGACTGTCAAATTTATCTGCCTCACAGCCACTCTC | |
131 gi|225356593|gb|FJ15+ TCCTTGACATCATAGTCGTTGGATTGGACTGTCAAATTTATCTGCCTCACAGCCACTCTC | |
132 ____________________________________________________________ | |
133 consensus TCCTTGACATCATAGTCGTTGGATTGGACTGTCAAATTTATCTGCCTCACAGCCACTCTC | |
134 | |
135 . : . : . : . : . : . : | |
136 gi|225356593|gb|FJ15+ TGCTCCCTCTTAAACTCGTCCAGGAATCCTGACAATGTGGGGAACAGATTAATCCATCCC | |
137 gi|225356593|gb|FJ15+ TGCTCCCTCTTAAACTCGTCCAGGAATCCTGACAATGTGGGGAACAGATTAATCCATCCC | |
138 ____________________________________________________________ | |
139 consensus TGCTCCCTCTTAAACTCGTCCAGGAATCCTGACAATGTGGGGAACAGATTAATCCATCCC | |
140 | |
141 . : . : . : . : . : . : | |
142 gi|225356593|gb|FJ15+ GCTTTGTCATCCTCTCCATCTGAATAGAGGTCTAGACAGAAGTCCCGAGAGGGGAATCCT | |
143 gi|225356593|gb|FJ15+ GCTTTGTCATCCTCTCCATCTGAATAGAGGTCTAGACAGAAGTCCCGAGAGGGGAATCCT | |
144 ____________________________________________________________ | |
145 consensus GCTTTGTCATCCTCTCCATCTGAATAGAGGTCTAGACAGAAGTCCCGAGAGGGGAATCCT | |
146 | |
147 . : . : . : . : . : . : | |
148 gi|225356593|gb|FJ15+ GACGAATCTGGATATTCAAAGTCCTGGAGGGTTATATGTTCTGGCTTCGTTCCGGTTTGC | |
149 gi|225356593|gb|FJ15+ GACGAATCTGGATATTCAAAGTCCTGGAGGGTTATATGTTCTGGCTTCGTTCCGGTTTGC | |
150 ____________________________________________________________ | |
151 consensus GACGAATCTGGATATTCAAAGTCCTGGAGGGTTATATGTTCTGGCTTCGTTCCGGTTTGC | |
152 | |
153 . : . : . : . : . : . : | |
154 gi|225356593|gb|FJ15+ TCTTGCGTTTGCATGACAATAATCTCGCCGGGGATTGTGTTAACCACAGCGTGTATTGTC | |
155 gi|225356593|gb|FJ15+ TCTTGCGTTTGCATGACAATAATCTCGCCGGGGATTGTGTTAACCACAGCGTGTATTGTC | |
156 ____________________________________________________________ | |
157 consensus TCTTGCGTTTGCATGACAATAATCTCGCCGGGGATTGTGTTAACCACAGCGTGTATTGTC | |
158 | |
159 . : . : . : . : . : . : | |
160 gi|225356593|gb|FJ15+ TCTTCGATCCGAGGTATGCTGAATCCCATTGTTATCATTAAACCCCTCATACGGTCATAC | |
161 gi|225356593|gb|FJ15+ TCTTCGATCCGAGGTATGCTGAATCCCATTGTTATCATTAAACCCCTCATACGGTCATAC | |
162 ____________________________________________________________ | |
163 consensus TCTTCGATCCGAGGTATGCTGAATCCCATTGTTATCATTAAACCCCTCATACGGTCATAC | |
164 | |
165 . : . : . : . : . : . : | |
166 gi|225356593|gb|FJ15+ AGAGTTCTTTGGCGTGCCGTTCTAGATACTGCCTTTTCAAAGGGATTATCCTTCTGGCAG | |
167 gi|225356593|gb|FJ15+ AGAGTTCTTTGGCGTGCCGTTCTAGATACTGCCTTTTCAAAGGGATTATCCTTCTGGCAG | |
168 ____________________________________________________________ | |
169 consensus AGAGTTCTTTGGCGTGCCGTTCTAGATACTGCCTTTTCAAAGGGATTATCCTTCTGGCAG | |
170 | |
171 . : . : . : . : . : . : | |
172 gi|225356593|gb|FJ15+ AGCATCATCTCAAGAGCATCGCTCTCAGGCATTGTGGGGACATGTATCACACGGTGTCTG | |
173 gi|225356593|gb|FJ15+ AGCATCATCTCAAGAGCATCGCTCTCAGGCATTGTGGGGACATGTATCACACGGTGTCTG | |
174 ____________________________________________________________ | |
175 consensus AGCATCATCTCAAGAGCATCGCTCTCAGGCATTGTGGGGACATGTATCACACGGTGTCTG | |
176 | |
177 . : . : . : . : . : . : | |
178 gi|225356593|gb|FJ15+ TGGTACACTCCCATAATTTGTACGCCAAGAAATTTGTGGTCCGTAATTAGAC | |
179 gi|225356593|gb|FJ15+ TGGTACACTCCCATAATTTGTACGCCAAGAAATTTGTGGTCCGTAATTAGAC | |
180 ____________________________________________________________ | |
181 consensus TGGTACACTCCCATAATTTGTACGCCAAGAAATTTGTGGTCCGTAATTAGAC | |
182 | |
183 ******************* Contig 2 ******************** | |
184 . : . : . : . : . : . : | |
185 gi|225356593|gb|FJ15+ TGGATTTTCATCCATTGCTGGAGGGCTTACTAGGATGGTCGACTGGATGTATGCCTGCCC | |
186 gi|225356593|gb|FJ15+ TGGATTTTCATCCATTGCTGGAGGGCTTACTAGGATGGTCGACTGGATGTATGCCTGCCC | |
187 ____________________________________________________________ | |
188 consensus TGGATTTTCATCCATTGCTGGAGGGCTTACTAGGATGGTCGACTGGATGTATGCCTGCCC | |
189 | |
190 . : . : . : . : . : . : | |
191 gi|225356593|gb|FJ15+ AAAGCGGCGGGGACGGGTTGTCTGTTACGGTGACGATGCATGTATAACATTTTGGAGCCA | |
192 gi|225356593|gb|FJ15+ AAAGCGGCGGGGACGGGTTGTCTGTTACGGTGACGATGCATGTATAACATTTTGGAGCCA | |
193 ____________________________________________________________ | |
194 consensus AAAGCGGCGGGGACGGGTTGTCTGTTACGGTGACGATGCATGTATAACATTTTGGAGCCA | |
195 | |
196 . : . : . : . : . : . : | |
197 gi|225356593|gb|FJ15+ GGGCGTCCTCTATCGGGTGGATCCAGATTTTAAACAAATGGACGGGTCCATAGATAGAGA | |
198 gi|225356593|gb|FJ15+ GGGCGTCCTCTATCGGGTGGATCCAGATTTTAAACAAATGGACGGGTCCATAGATAGAGA | |
199 ____________________________________________________________ | |
200 consensus GGGCGTCCTCTATCGGGTGGATCCAGATTTTAAACAAATGGACGGGTCCATAGATAGAGA | |
201 | |
202 . : . : . : . : . : . : | |
203 gi|225356593|gb|FJ15+ GGATGCAAGAATCACCATTGAGTGGGTCCTCCACCATCTCAGAAAGGATTTAGGTGTAGA | |
204 gi|225356593|gb|FJ15+ GGATGCAAGAATCACCATTGAGTGGGTCCTCCACCATCTCAGAAAGGATTTAGGTGTAGA | |
205 ____________________________________________________________ | |
206 consensus GGATGCAAGAATCACCATTGAGTGGGTCCTCCACCATCTCAGAAAGGATTTAGGTGTAGA | |
207 | |
208 . : . : . : . : . : . : | |
209 gi|225356593|gb|FJ15+ GGAGACCCCTGCTTTTTGGAAGACAGTTGCAGCAGTGTGGCTTGATATGGCCATTGACCC | |
210 gi|225356593|gb|FJ15+ GGAGACCCCTGCTTTTTGGAAGACAGTTGCAGCAGTGTGGCTTGATATGGCCATTGACCC | |
211 ____________________________________________________________ | |
212 consensus GGAGACCCCTGCTTTTTGGAAGACAGTTGCAGCAGTGTGGCTTGATATGGCCATTGACCC | |
213 | |
214 . : . : . : . : . : . : | |
215 gi|225356593|gb|FJ15+ CCACTTTATCGTGGATGGTAAAACTGTTTACAAGAAGAAGAACCCCCATGGACTCATGAC | |
216 gi|225356593|gb|FJ15+ CCACTTTATCGTGGATGGTAAAACTGTTTACAAGAAGAAGAACCCCCATGGACTCATGAC | |
217 ____________________________________________________________ | |
218 consensus CCACTTTATCGTGGATGGTAAAACTGTTTACAAGAAGAAGAACCCCCATGGACTCATGAC | |
219 | |
220 . : . : . : . : . : . : | |
221 gi|225356593|gb|FJ15+ TGGAGTTCCAGGAACAACCCTATTTGACACTGTGAAATCTGTAATAGTCTGGAATGAAAT | |
222 gi|225356593|gb|FJ15+ TGGAGTTCCAGGAACAACCCTATTTGACACTGTGAAATCTGTAATAGTCTGGAATGAAAT | |
223 ____________________________________________________________ | |
224 consensus TGGAGTTCCAGGAACAACCCTATTTGACACTGTGAAATCTGTAATAGTCTGGAATGAAAT | |
225 | |
226 . : . : . : . : . : . : | |
227 gi|225356593|gb|FJ15+ GTTGGATCAGGCTGGTGCAGGTTCCATAGACCTTTTAAATGAAGCTCAAGTAGTTGAATG | |
228 gi|225356593|gb|FJ15+ GTTGGATCAGGCTGGTGCAGGTTCCATAGACCTTTTAAATGAAGCTCAAGTAGTTGAATG | |
229 ____________________________________________________________ | |
230 consensus GTTGGATCAGGCTGGTGCAGGTTCCATAGACCTTTTAAATGAAGCTCAAGTAGTTGAATG | |
231 | |
232 . : . : . : . : . : . : | |
233 gi|225356593|gb|FJ15+ GATGAAGAGACAAGGCTTGGTTGTCAAAGAGGGAA | |
234 gi|225356593|gb|FJ15+ GATGAAGAGACAAGGCTTAGTTGTCA | |
235 ____________________________________________________________ | |
236 consensus GATGAAGAGACAAGGCTTAGTTGTCAAAGAGGGAA | |
237 | |
238 ******************* Contig 3 ******************** | |
239 . : . : . : . : . : . : | |
240 gi|225356593|gb|FJ15+ AACGTAAAACAAACGACATGGATGCATCTAACCCTATTATTTCAAGCGATAGAAGCACTG | |
241 gi|225356593|gb|FJ15+ ATAGAAGCACTG | |
242 ____________________________________________________________ | |
243 consensus AACGTAAAACAAACGACATGGATGCATCTAACCCTATTATTTCAAGCGATAGAAGCACTG | |
244 | |
245 . : . : . : . : . : . : | |
246 gi|225356593|gb|FJ15+ TGAATCAGGTTTATGCGAAGATGGTGAGGAGAAAACGGCAAGATCTTGCCTATCTCCAGG | |
247 gi|225356593|gb|FJ15+ TGAATCAGGTTTACGCGAAGATGGTGAGGAGAAAACGGCAAGATCTTGCCTATCTCCAGG | |
248 ____________________________________________________________ | |
249 consensus TGAATCAGGTTTACGCGAAGATGGTGAGGAGAAAACGGCAAGATCTTGCCTATCTCCAGG | |
250 | |
251 . : . : . : . : . : . : | |
252 gi|225356593|gb|FJ15+ AGTTGGTGAGGACAGCCCATCGAGAGATTCTCCCCCAAGGAGAACTTCTCCATGAGTCGG | |
253 gi|225356593|gb|FJ15+ AGTTGGTGAGGACAGCCCATCGAGAGATTCTCCCCCAAGGAGAACTTCTCCATGAGTCGG | |
254 ____________________________________________________________ | |
255 consensus AGTTGGTGAGGACAGCCCATCGAGAGATTCTCCCCCAAGGAGAACTTCTCCATGAGTCGG | |
256 | |
257 . : . : . : . : . : . : | |
258 gi|225356593|gb|FJ15+ AAGCCAAACAGTATGTAGCCGAATATAAGGCTCGACTACCTGTGGTTGACACTAAGAAAG | |
259 gi|225356593|gb|FJ15+ AAGCCAAACAGTATGTAGCCGAATATAAGGCTCGACTACCTGTGGTTGACACTAAGAAAG | |
260 ____________________________________________________________ | |
261 consensus AAGCCAAACAGTATGTAGCCGAATATAAGGCTCGACTACCTGTGGTTGACACTAAGAAAG | |
262 | |
263 . : . : . : . : . : . : | |
264 gi|225356593|gb|FJ15+ TTGGCGAACTGCCAACTGAGGTCTTCCAGGTAGCACTCCCAAGT | |
265 gi|225356593|gb|FJ15+ TTGGCGAACTGCCAACTGAGGTCTTCCAGGTAGCACTCCCAAGT | |
266 ____________________________________________________________ | |
267 consensus TTGGCGAACTGCCAACTGAGGTCTTCCAGGTAGCACTCCCAAGT | |
268 | |
269 ******************* Contig 4 ******************** | |
270 . : . : . : . : . : . : | |
271 gi|225356593|gb|FJ15+ TACGGTGCCCCTAAGAGAATCGAACTCAAACTCTCCAGTTGTGTAGTAACCAGAGAGCCA | |
272 gi|225356593|gb|FJ15+ GGTGCCCCTAAGAGAATCGAACTCAAACTCTCCAGTTGTGTAGTAACCAGAGAGCCA | |
273 ____________________________________________________________ | |
274 consensus TACGGTGCCCCTAAGAGAATCGAACTCAAACTCTCCAGTTGTGTAGTAACCAGAGAGCCA | |
275 | |
276 . : . : . : . : . : . : | |
277 gi|225356593|gb|FJ15+ CCGAGGAGGGACGGGGTGGTGATTATGAAAAGATGATGGGTTTTGGGGAGAGGTTATACA | |
278 gi|225356593|gb|FJ15+ CCGAGGAGGGACGGGGTGGTGATTATGAAAAGATGATGGGTTTTGGGGAGAGGTTATACA | |
279 ____________________________________________________________ | |
280 consensus CCGAGGAGGGACGGGGTGGTGATTATGAAAAGATGATGGGTTTTGGGGAGAGGTTATACA | |
281 | |
282 . : . : . : . : . : . : | |
283 gi|225356593|gb|FJ15+ ATTTCAAAATCTTGAACGGCCACTGGGTCTTCAGATATCACTTTGAAAGGACTGAGTGTC | |
284 gi|225356593|gb|FJ15+ ATTTCAAAATCTTGAACGGCCACTGGGTCTTCAGATATCACTTTGAAAGGACTGAGTGTC | |
285 ____________________________________________________________ | |
286 consensus ATTTCAAAATCTTGAACGGCCACTGGGTCTTCAGATATCACTTTGAAAGGACTGAGTGTC | |
287 | |
288 . : . : . : . : . : . : | |
289 gi|225356593|gb|FJ15+ GTTCCATCAGGCATACCCTCAAGTTTGGTCCTAATCTTAGCTGTGTCCTTGCTGAGAGCA | |
290 gi|225356593|gb|FJ15+ GTTCCATCAGGCATACCCTCAAGTTTGGTCCTAATCTTAGCTGTGTCCTTGCTGAGAGCA | |
291 ____________________________________________________________ | |
292 consensus GTTCCATCAGGCATACCCTCAAGTTTGGTCCTAATCTTAGCTGTGTCCTTGCTGAGAGCA | |
293 | |
294 . : . : . : . : . : . : | |
295 gi|225356593|gb|FJ15+ ACAGTTCTTGTTA | |
296 gi|225356593|gb|FJ15+ ACAGTTCTTGTTA | |
297 ____________________________________________________________ | |
298 consensus ACAGTTCTTGTTA | |
299 |