view test-data/cap3stdout.txt @ 1:a36a1acd5807 draft default tip

planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/main/tools/cap3 commit 3bb28761a3768b3b84616be41efc40683653da60
author artbio
date Thu, 12 Oct 2023 23:17:38 +0000
parents d76a0d8a9eac
children
line wrap: on
line source

Number of segment pairs = 342; number of pairwise comparisons = 14
'+' means given segment; '-' means reverse complement

Overlaps            Containments  No. of Constraints Supporting Overlap

******************* Contig 1 ********************
gi|225356593|gb|FJ150422.1|_Drosophila_A_virus_iso+
                    gi|225356593|gb|FJ150422.1|_Drosophila_A_virus_iso+ is in gi|225356593|gb|FJ150422.1|_Drosophila_A_virus_iso+
                    gi|225356593|gb|FJ150422.1|_Drosophila_A_virus_iso+ is in gi|225356593|gb|FJ150422.1|_Drosophila_A_virus_iso+
gi|225356593|gb|FJ150422.1|_Drosophila_A_virus_iso+
                    gi|225356593|gb|FJ150422.1|_Drosophila_A_virus_iso+ is in gi|225356593|gb|FJ150422.1|_Drosophila_A_virus_iso+
                    gi|225356593|gb|FJ150422.1|_Drosophila_A_virus_iso+ is in gi|225356593|gb|FJ150422.1|_Drosophila_A_virus_iso+
gi|225356593|gb|FJ150422.1|_Drosophila_A_virus_iso+
******************* Contig 2 ********************
gi|225356593|gb|FJ150422.1|_Drosophila_A_virus_iso+
                    gi|225356593|gb|FJ150422.1|_Drosophila_A_virus_iso+ is in gi|225356593|gb|FJ150422.1|_Drosophila_A_virus_iso+
******************* Contig 3 ********************
gi|225356593|gb|FJ150422.1|_Drosophila_A_virus_iso+
gi|225356593|gb|FJ150422.1|_Drosophila_A_virus_iso+
******************* Contig 4 ********************
gi|225356593|gb|FJ150422.1|_Drosophila_A_virus_iso+
gi|225356593|gb|FJ150422.1|_Drosophila_A_virus_iso+

DETAILED DISPLAY OF CONTIGS
******************* Contig 1 ********************
                          .    :    .    :    .    :    .    :    .    :    .    :
gi|225356593|gb|FJ15+ GTTGCATATTCAACCTGCCGAGCCCAGGAAGACTCAGGCGGGGGAGGCACTACATTAGGG
gi|225356593|gb|FJ15+ GTTGCATATTCAACCTGCCGAGCCCAGGAAGACTCAGGCGGGGGAGGCACTACATTAGGG
gi|225356593|gb|FJ15+ GTTGCATATTCAACCTGCCGAGCCCAGGAAGACTCAGGCGGGGGAGGCACTACATTAGGG
                      ____________________________________________________________
consensus             GTTGCATATTCAACCTGCCGAGCCCAGGAAGACTCAGGCGGGGGAGGCACTACATTAGGG

                          .    :    .    :    .    :    .    :    .    :    .    :
gi|225356593|gb|FJ15+ GTCGCAAAGCTAGACTTCTTGTATGGGATGTTGTTAACCTCCAAAATAGCTGCACAGATG
gi|225356593|gb|FJ15+ GTCGCAAAGCTAGACTTCTTGTATGGGATGTTGTTAACCTCCAAAATAGCTGCACAGATG
gi|225356593|gb|FJ15+ GTCGCAAAGCTAGACTTCTTGTATGGGATGTTGTTAACCTCCAAAATAGCTGCACAGATG
                      ____________________________________________________________
consensus             GTCGCAAAGCTAGACTTCTTGTATGGGATGTTGTTAACCTCCAAAATAGCTGCACAGATG

                          .    :    .    :    .    :    .    :    .    :    .    :
gi|225356593|gb|FJ15+ TATTCCTTAGCCAGTTTGGCAGAGGAAGACCAGGCTTCTCCCAACAGCTTCACATCCTGG
gi|225356593|gb|FJ15+ TATTCCTTAGCCAGTTTGGCAGAGGAAGACCAGGCTTCTCCCAACAGCTTCACATCCTGG
gi|225356593|gb|FJ15+                                                    ACATCCTGG
gi|225356593|gb|FJ15+ TATTCCTTAGCCAGTTTGGCAGAGGAAGACCAGGCTTCTCCCAACAGCTTCACATCCTGG
                      ____________________________________________________________
consensus             TATTCCTTAGCCAGTTTGGCAGAGGAAGACCAGGCTTCTCCCAACAGCTTCACATCCTGG

                          .    :    .    :    .    :    .    :    .    :    .    :
gi|225356593|gb|FJ15+ GTATGGTGGCTGTGGGCGTAGAGCCTAACTCCAACAGGATTGGCAGCATTTGGCCGTACC
gi|225356593|gb|FJ15+ GTATGGTGGCTGTGGGC                                           
gi|225356593|gb|FJ15+ GTATGGTGGCTGTGGGCGTAGAGCCTAACTCCAACAGGATTGGCAGCATTTGGCCGTACC
gi|225356593|gb|FJ15+ GTATGGTGGCTGTGGGCGTAGAGCCTAACTCCAACAGGATTGGCAGCATTTGGCCGTACC
                      ____________________________________________________________
consensus             GTATGGTGGCTGTGGGCGTAGAGCCTAACTCCAACAGGATTGGCAGCATTTGGCCGTACC

                          .    :    .    :    .    :    .    :    .    :    .    :
gi|225356593|gb|FJ15+ TCAGATATCCATTTAGTGAATCCTGAGAATCTCCCGCTGACCATTGCATGGACATATGCC
gi|225356593|gb|FJ15+ TCAGATATCCATTTAGTGAATCCTGAGAATCTCCCGCTGACCATTGCATGGACATATGCC
gi|225356593|gb|FJ15+ TCAGATATCCATTTAGTGAATCCTGAGAATCTCCCGCTGACCATTGCATGGACATATGCC
                      ____________________________________________________________
consensus             TCAGATATCCATTTAGTGAATCCTGAGAATCTCCCGCTGACCATTGCATGGACATATGCC

                          .    :    .    :    .    :    .    :    .    :    .    :
gi|225356593|gb|FJ15+ ATGGCATCCTCTGCTGTATTTATATCGTGGGGAGGTGGATGGAGGTTCGATACTCCTGCA
gi|225356593|gb|FJ15+ ATGGCATCCTCTGCTGTATTTATATCGTGGGGAGGTGGATGGAGGTTCGATACTCCTGCA
gi|225356593|gb|FJ15+ ATGGCATCCTCTGCTGTATTTATATCGTGGGGAGGTGGATGGAGGTTCGATACTCCTGCA
gi|225356593|gb|FJ15+                                                   TACTCCTGCA
                      ____________________________________________________________
consensus             ATGGCATCCTCTGCTGTATTTATATCGTGGGGAGGTGGATGGAGGTTCGATACTCCTGCA

                          .    :    .    :    .    :    .    :    .    :    .    :
gi|225356593|gb|FJ15+ ACGTCCAGGTTAATGAGCTCAGGTTGGGTTTTTAC                         
gi|225356593|gb|FJ15+ ACGTCCAGGTTAATGAGCTCAGGTTGGGTTTTTAC                         
gi|225356593|gb|FJ15+ ACGTCCAGGTTAATGAGCTCAGGTTGGGTTTTTACAATCTCCCGTCTCAAAGCTGACGTT
gi|225356593|gb|FJ15+          TTAATGAGCTCAGGTTGGGTTTTTACAATCTCCCGTCTCAAAGCTGACGTT
gi|225356593|gb|FJ15+ ACGTCCAGATTAATGAGCTCAGGTTGGGTTTTTACAATCTCCCGTCTCAAAGCTGACGTT
                      ____________________________________________________________
consensus             ACGTCCAGGTTAATGAGCTCAGGTTGGGTTTTTACAATCTCCCGTCTCAAAGCTGACGTT

                          .    :    .    :    .    :    .    :    .    :    .    :
gi|225356593|gb|FJ15+ CTGGCTGCAGTAGTCTTATCAATCAGATTACGCTTTTCCTCCATTTCTTCTCTTTGACTG
gi|225356593|gb|FJ15+ CTGGCTGCAGTAGTCTTATCAATCAGATTACGCTTTTCCTCCATTTCTTCTCTTTGACTG
gi|225356593|gb|FJ15+ CTGGCTGCAGTAGTCTTATCAATCAGATTACGCTTTTCCTCCATTTCTTCTCTTTGACTG
                      ____________________________________________________________
consensus             CTGGCTGCAGTAGTCTTATCAATCAGATTACGCTTTTCCTCCATTTCTTCTCTTTGACTG

                          .    :    .    :    .    :    .    :    .    :    .    :
gi|225356593|gb|FJ15+ TCCTGCAATGTGGGGAAAGGAGTCACTAGTGGGTATAAGGAAATCAAGTCTCCAAGTTCA
gi|225356593|gb|FJ15+ TCCTGCAATGTGGGGAAAGGAGTCACTAGTGGGTATAAGGAAATCAAGTCTCCAAGTTCA
gi|225356593|gb|FJ15+ TCCTGCAATGTGGGGAAAGGAGTCACTAGTGGGTATAAGGAAATCAAGTCTCCAAGTTCA
                      ____________________________________________________________
consensus             TCCTGCAATGTGGGGAAAGGAGTCACTAGTGGGTATAAGGAAATCAAGTCTCCAAGTTCA

                          .    :    .    :    .    :    .    :    .    :    .    :
gi|225356593|gb|FJ15+ TCTCCAGTAGTGAAATAGCCCCCTTTAGCAGCACCCACAACAATTTGGTAGGCACTAGCT
gi|225356593|gb|FJ15+ TCTCCAGTAGTGAAATAGCCCCCTTTAGCAGCACCCACAACAATTTGGTAGGCACTAGCT
gi|225356593|gb|FJ15+ TCTCCAGTAGTGAAATAGCCCCCTTTAGCAGCACCCACAACAATTTGGTAGGCACTAGCT
                      ____________________________________________________________
consensus             TCTCCAGTAGTGAAATAGCCCCCTTTAGCAGCACCCACAACAATTTGGTAGGCACTAGCT

                          .    :    .    :    .    :    .    :    .    :    .    :
gi|225356593|gb|FJ15+ CCAACTTTATCGGCAACAGTACCAACCTGAGAAACACCTCCAACTGAGGTAAGCCATCTA
gi|225356593|gb|FJ15+ CCAACTTTATCGGCAACAGTACCAACCTGAGAAACACCTCCAACTGAGGTAAGCCATCTA
gi|225356593|gb|FJ15+ CCAACTTTATCGGCAACAGTACCAACCTGAGAAACACCTCCAACTGAGGTAAGCCATCTA
                      ____________________________________________________________
consensus             CCAACTTTATCGGCAACAGTACCAACCTGAGAAACACCTCCAACTGAGGTAAGCCATCTA

                          .    :    .    :    .    :    .    :    .    :    .    :
gi|225356593|gb|FJ15+ ACGACGGCTTGAGCCATATTTGGTAGGAATTTCTCAGGGATGTCACCACTTTCTGTGATC
gi|225356593|gb|FJ15+ ACGACGGCTTGAGCCATATTTGGTAGGAATTTCTCAGGGATGTCACCACTTTCTGTGATC
gi|225356593|gb|FJ15+ ACGACGGCTTGAGCCATATTTGGTAGGAATTTCTCAGGGATGTCACCACTTTCTGTGATC
                      ____________________________________________________________
consensus             ACGACGGCTTGAGCCATATTTGGTAGGAATTTCTCAGGGATGTCACCACTTTCTGTGATC

                          .    :    .    :    .    :    .    :    .    :    .    :
gi|225356593|gb|FJ15+ CGAACTACTTTGGGTCTGGGGTTCGGTTCTGAATACTGGACTTGCTGAGGTCTAAGAGCC
gi|225356593|gb|FJ15+ CGAACTACTTTGGGTCTGGGGTTCGGTTCTGAATACTGGACTTGCTGAGGT         
gi|225356593|gb|FJ15+ CGAACTACTTTGGGTCTGGGGTTCGGTTCTGAATACTGGACTTGCTGAGGT         
gi|225356593|gb|FJ15+                          GTTCTGAATACTGGACTTGCTGAGGTCTAAGAGCC
                      ____________________________________________________________
consensus             CGAACTACTTTGGGTCTGGGGTTCGGTTCTGAATACTGGACTTGCTGAGGTCTAAGAGCC

                          .    :    .    :    .    :    .    :    .    :    .    :
gi|225356593|gb|FJ15+ TCAAACACTTTGTACTCATCATTCAGATTCGCCTCAGGAGGAGGAGGGCATCCTACAACC
gi|225356593|gb|FJ15+ TCAAACACTTTGTACTCATCATTCAGATTCGCCTCAGGAGGAGGAGGGCATCCTACAACC
                      ____________________________________________________________
consensus             TCAAACACTTTGTACTCATCATTCAGATTCGCCTCAGGAGGAGGAGGGCATCCTACAACC

                          .    :    .    :    .    :    .    :    .    :    .    :
gi|225356593|gb|FJ15+ TCCTTGACATCATAGTCGTTGGATTGGACTGTCAAATTTATCTGCCTCACAGCCACTCTC
gi|225356593|gb|FJ15+ TCCTTGACATCATAGTCGTTGGATTGGACTGTCAAATTTATCTGCCTCACAGCCACTCTC
                      ____________________________________________________________
consensus             TCCTTGACATCATAGTCGTTGGATTGGACTGTCAAATTTATCTGCCTCACAGCCACTCTC

                          .    :    .    :    .    :    .    :    .    :    .    :
gi|225356593|gb|FJ15+ TGCTCCCTCTTAAACTCGTCCAGGAATCCTGACAATGTGGGGAACAGATTAATCCATCCC
gi|225356593|gb|FJ15+ TGCTCCCTCTTAAACTCGTCCAGGAATCCTGACAATGTGGGGAACAGATTAATCCATCCC
                      ____________________________________________________________
consensus             TGCTCCCTCTTAAACTCGTCCAGGAATCCTGACAATGTGGGGAACAGATTAATCCATCCC

                          .    :    .    :    .    :    .    :    .    :    .    :
gi|225356593|gb|FJ15+ GCTTTGTCATCCTCTCCATCTGAATAGAGGTCTAGACAGAAGTCCCGAGAGGGGAATCCT
gi|225356593|gb|FJ15+ GCTTTGTCATCCTCTCCATCTGAATAGAGGTCTAGACAGAAGTCCCGAGAGGGGAATCCT
                      ____________________________________________________________
consensus             GCTTTGTCATCCTCTCCATCTGAATAGAGGTCTAGACAGAAGTCCCGAGAGGGGAATCCT

                          .    :    .    :    .    :    .    :    .    :    .    :
gi|225356593|gb|FJ15+ GACGAATCTGGATATTCAAAGTCCTGGAGGGTTATATGTTCTGGCTTCGTTCCGGTTTGC
gi|225356593|gb|FJ15+ GACGAATCTGGATATTCAAAGTCCTGGAGGGTTATATGTTCTGGCTTCGTTCCGGTTTGC
                      ____________________________________________________________
consensus             GACGAATCTGGATATTCAAAGTCCTGGAGGGTTATATGTTCTGGCTTCGTTCCGGTTTGC

                          .    :    .    :    .    :    .    :    .    :    .    :
gi|225356593|gb|FJ15+ TCTTGCGTTTGCATGACAATAATCTCGCCGGGGATTGTGTTAACCACAGCGTGTATTGTC
gi|225356593|gb|FJ15+ TCTTGCGTTTGCATGACAATAATCTCGCCGGGGATTGTGTTAACCACAGCGTGTATTGTC
                      ____________________________________________________________
consensus             TCTTGCGTTTGCATGACAATAATCTCGCCGGGGATTGTGTTAACCACAGCGTGTATTGTC

                          .    :    .    :    .    :    .    :    .    :    .    :
gi|225356593|gb|FJ15+ TCTTCGATCCGAGGTATGCTGAATCCCATTGTTATCATTAAACCCCTCATACGGTCATAC
gi|225356593|gb|FJ15+ TCTTCGATCCGAGGTATGCTGAATCCCATTGTTATCATTAAACCCCTCATACGGTCATAC
                      ____________________________________________________________
consensus             TCTTCGATCCGAGGTATGCTGAATCCCATTGTTATCATTAAACCCCTCATACGGTCATAC

                          .    :    .    :    .    :    .    :    .    :    .    :
gi|225356593|gb|FJ15+ AGAGTTCTTTGGCGTGCCGTTCTAGATACTGCCTTTTCAAAGGGATTATCCTTCTGGCAG
gi|225356593|gb|FJ15+ AGAGTTCTTTGGCGTGCCGTTCTAGATACTGCCTTTTCAAAGGGATTATCCTTCTGGCAG
                      ____________________________________________________________
consensus             AGAGTTCTTTGGCGTGCCGTTCTAGATACTGCCTTTTCAAAGGGATTATCCTTCTGGCAG

                          .    :    .    :    .    :    .    :    .    :    .    :
gi|225356593|gb|FJ15+ AGCATCATCTCAAGAGCATCGCTCTCAGGCATTGTGGGGACATGTATCACACGGTGTCTG
gi|225356593|gb|FJ15+ AGCATCATCTCAAGAGCATCGCTCTCAGGCATTGTGGGGACATGTATCACACGGTGTCTG
                      ____________________________________________________________
consensus             AGCATCATCTCAAGAGCATCGCTCTCAGGCATTGTGGGGACATGTATCACACGGTGTCTG

                          .    :    .    :    .    :    .    :    .    :    .    :
gi|225356593|gb|FJ15+ TGGTACACTCCCATAATTTGTACGCCAAGAAATTTGTGGTCCGTAATTAGAC
gi|225356593|gb|FJ15+ TGGTACACTCCCATAATTTGTACGCCAAGAAATTTGTGGTCCGTAATTAGAC
                      ____________________________________________________________
consensus             TGGTACACTCCCATAATTTGTACGCCAAGAAATTTGTGGTCCGTAATTAGAC

******************* Contig 2 ********************
                          .    :    .    :    .    :    .    :    .    :    .    :
gi|225356593|gb|FJ15+ TGGATTTTCATCCATTGCTGGAGGGCTTACTAGGATGGTCGACTGGATGTATGCCTGCCC
gi|225356593|gb|FJ15+ TGGATTTTCATCCATTGCTGGAGGGCTTACTAGGATGGTCGACTGGATGTATGCCTGCCC
                      ____________________________________________________________
consensus             TGGATTTTCATCCATTGCTGGAGGGCTTACTAGGATGGTCGACTGGATGTATGCCTGCCC

                          .    :    .    :    .    :    .    :    .    :    .    :
gi|225356593|gb|FJ15+ AAAGCGGCGGGGACGGGTTGTCTGTTACGGTGACGATGCATGTATAACATTTTGGAGCCA
gi|225356593|gb|FJ15+ AAAGCGGCGGGGACGGGTTGTCTGTTACGGTGACGATGCATGTATAACATTTTGGAGCCA
                      ____________________________________________________________
consensus             AAAGCGGCGGGGACGGGTTGTCTGTTACGGTGACGATGCATGTATAACATTTTGGAGCCA

                          .    :    .    :    .    :    .    :    .    :    .    :
gi|225356593|gb|FJ15+ GGGCGTCCTCTATCGGGTGGATCCAGATTTTAAACAAATGGACGGGTCCATAGATAGAGA
gi|225356593|gb|FJ15+ GGGCGTCCTCTATCGGGTGGATCCAGATTTTAAACAAATGGACGGGTCCATAGATAGAGA
                      ____________________________________________________________
consensus             GGGCGTCCTCTATCGGGTGGATCCAGATTTTAAACAAATGGACGGGTCCATAGATAGAGA

                          .    :    .    :    .    :    .    :    .    :    .    :
gi|225356593|gb|FJ15+ GGATGCAAGAATCACCATTGAGTGGGTCCTCCACCATCTCAGAAAGGATTTAGGTGTAGA
gi|225356593|gb|FJ15+ GGATGCAAGAATCACCATTGAGTGGGTCCTCCACCATCTCAGAAAGGATTTAGGTGTAGA
                      ____________________________________________________________
consensus             GGATGCAAGAATCACCATTGAGTGGGTCCTCCACCATCTCAGAAAGGATTTAGGTGTAGA

                          .    :    .    :    .    :    .    :    .    :    .    :
gi|225356593|gb|FJ15+ GGAGACCCCTGCTTTTTGGAAGACAGTTGCAGCAGTGTGGCTTGATATGGCCATTGACCC
gi|225356593|gb|FJ15+ GGAGACCCCTGCTTTTTGGAAGACAGTTGCAGCAGTGTGGCTTGATATGGCCATTGACCC
                      ____________________________________________________________
consensus             GGAGACCCCTGCTTTTTGGAAGACAGTTGCAGCAGTGTGGCTTGATATGGCCATTGACCC

                          .    :    .    :    .    :    .    :    .    :    .    :
gi|225356593|gb|FJ15+ CCACTTTATCGTGGATGGTAAAACTGTTTACAAGAAGAAGAACCCCCATGGACTCATGAC
gi|225356593|gb|FJ15+ CCACTTTATCGTGGATGGTAAAACTGTTTACAAGAAGAAGAACCCCCATGGACTCATGAC
                      ____________________________________________________________
consensus             CCACTTTATCGTGGATGGTAAAACTGTTTACAAGAAGAAGAACCCCCATGGACTCATGAC

                          .    :    .    :    .    :    .    :    .    :    .    :
gi|225356593|gb|FJ15+ TGGAGTTCCAGGAACAACCCTATTTGACACTGTGAAATCTGTAATAGTCTGGAATGAAAT
gi|225356593|gb|FJ15+ TGGAGTTCCAGGAACAACCCTATTTGACACTGTGAAATCTGTAATAGTCTGGAATGAAAT
                      ____________________________________________________________
consensus             TGGAGTTCCAGGAACAACCCTATTTGACACTGTGAAATCTGTAATAGTCTGGAATGAAAT

                          .    :    .    :    .    :    .    :    .    :    .    :
gi|225356593|gb|FJ15+ GTTGGATCAGGCTGGTGCAGGTTCCATAGACCTTTTAAATGAAGCTCAAGTAGTTGAATG
gi|225356593|gb|FJ15+ GTTGGATCAGGCTGGTGCAGGTTCCATAGACCTTTTAAATGAAGCTCAAGTAGTTGAATG
                      ____________________________________________________________
consensus             GTTGGATCAGGCTGGTGCAGGTTCCATAGACCTTTTAAATGAAGCTCAAGTAGTTGAATG

                          .    :    .    :    .    :    .    :    .    :    .    :
gi|225356593|gb|FJ15+ GATGAAGAGACAAGGCTTGGTTGTCAAAGAGGGAA
gi|225356593|gb|FJ15+ GATGAAGAGACAAGGCTTAGTTGTCA         
                      ____________________________________________________________
consensus             GATGAAGAGACAAGGCTTAGTTGTCAAAGAGGGAA

******************* Contig 3 ********************
                          .    :    .    :    .    :    .    :    .    :    .    :
gi|225356593|gb|FJ15+ AACGTAAAACAAACGACATGGATGCATCTAACCCTATTATTTCAAGCGATAGAAGCACTG
gi|225356593|gb|FJ15+                                                 ATAGAAGCACTG
                      ____________________________________________________________
consensus             AACGTAAAACAAACGACATGGATGCATCTAACCCTATTATTTCAAGCGATAGAAGCACTG

                          .    :    .    :    .    :    .    :    .    :    .    :
gi|225356593|gb|FJ15+ TGAATCAGGTTTATGCGAAGATGGTGAGGAGAAAACGGCAAGATCTTGCCTATCTCCAGG
gi|225356593|gb|FJ15+ TGAATCAGGTTTACGCGAAGATGGTGAGGAGAAAACGGCAAGATCTTGCCTATCTCCAGG
                      ____________________________________________________________
consensus             TGAATCAGGTTTACGCGAAGATGGTGAGGAGAAAACGGCAAGATCTTGCCTATCTCCAGG

                          .    :    .    :    .    :    .    :    .    :    .    :
gi|225356593|gb|FJ15+ AGTTGGTGAGGACAGCCCATCGAGAGATTCTCCCCCAAGGAGAACTTCTCCATGAGTCGG
gi|225356593|gb|FJ15+ AGTTGGTGAGGACAGCCCATCGAGAGATTCTCCCCCAAGGAGAACTTCTCCATGAGTCGG
                      ____________________________________________________________
consensus             AGTTGGTGAGGACAGCCCATCGAGAGATTCTCCCCCAAGGAGAACTTCTCCATGAGTCGG

                          .    :    .    :    .    :    .    :    .    :    .    :
gi|225356593|gb|FJ15+ AAGCCAAACAGTATGTAGCCGAATATAAGGCTCGACTACCTGTGGTTGACACTAAGAAAG
gi|225356593|gb|FJ15+ AAGCCAAACAGTATGTAGCCGAATATAAGGCTCGACTACCTGTGGTTGACACTAAGAAAG
                      ____________________________________________________________
consensus             AAGCCAAACAGTATGTAGCCGAATATAAGGCTCGACTACCTGTGGTTGACACTAAGAAAG

                          .    :    .    :    .    :    .    :    .    :    .    :
gi|225356593|gb|FJ15+ TTGGCGAACTGCCAACTGAGGTCTTCCAGGTAGCACTCCCAAGT
gi|225356593|gb|FJ15+ TTGGCGAACTGCCAACTGAGGTCTTCCAGGTAGCACTCCCAAGT
                      ____________________________________________________________
consensus             TTGGCGAACTGCCAACTGAGGTCTTCCAGGTAGCACTCCCAAGT

******************* Contig 4 ********************
                          .    :    .    :    .    :    .    :    .    :    .    :
gi|225356593|gb|FJ15+ TACGGTGCCCCTAAGAGAATCGAACTCAAACTCTCCAGTTGTGTAGTAACCAGAGAGCCA
gi|225356593|gb|FJ15+    GGTGCCCCTAAGAGAATCGAACTCAAACTCTCCAGTTGTGTAGTAACCAGAGAGCCA
                      ____________________________________________________________
consensus             TACGGTGCCCCTAAGAGAATCGAACTCAAACTCTCCAGTTGTGTAGTAACCAGAGAGCCA

                          .    :    .    :    .    :    .    :    .    :    .    :
gi|225356593|gb|FJ15+ CCGAGGAGGGACGGGGTGGTGATTATGAAAAGATGATGGGTTTTGGGGAGAGGTTATACA
gi|225356593|gb|FJ15+ CCGAGGAGGGACGGGGTGGTGATTATGAAAAGATGATGGGTTTTGGGGAGAGGTTATACA
                      ____________________________________________________________
consensus             CCGAGGAGGGACGGGGTGGTGATTATGAAAAGATGATGGGTTTTGGGGAGAGGTTATACA

                          .    :    .    :    .    :    .    :    .    :    .    :
gi|225356593|gb|FJ15+ ATTTCAAAATCTTGAACGGCCACTGGGTCTTCAGATATCACTTTGAAAGGACTGAGTGTC
gi|225356593|gb|FJ15+ ATTTCAAAATCTTGAACGGCCACTGGGTCTTCAGATATCACTTTGAAAGGACTGAGTGTC
                      ____________________________________________________________
consensus             ATTTCAAAATCTTGAACGGCCACTGGGTCTTCAGATATCACTTTGAAAGGACTGAGTGTC

                          .    :    .    :    .    :    .    :    .    :    .    :
gi|225356593|gb|FJ15+ GTTCCATCAGGCATACCCTCAAGTTTGGTCCTAATCTTAGCTGTGTCCTTGCTGAGAGCA
gi|225356593|gb|FJ15+ GTTCCATCAGGCATACCCTCAAGTTTGGTCCTAATCTTAGCTGTGTCCTTGCTGAGAGCA
                      ____________________________________________________________
consensus             GTTCCATCAGGCATACCCTCAAGTTTGGTCCTAATCTTAGCTGTGTCCTTGCTGAGAGCA

                          .    :    .    :    .    :    .    :    .    :    .    :
gi|225356593|gb|FJ15+ ACAGTTCTTGTTA
gi|225356593|gb|FJ15+ ACAGTTCTTGTTA
                      ____________________________________________________________
consensus             ACAGTTCTTGTTA