Mercurial > repos > artbio > cherry_pick_fasta

comparison cherry_pick_fasta.py @ 2:321cad0eb507 draft

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"planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/cherry_pick_fasta commit b5ef783237b244d684e26b1ed1cc333a8305ce3e"
author artbio
date Tue, 16 Mar 2021 23:25:57 +0000
parents ea8fde9c6f82
children c282a8a47dd9
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1:ea8fde9c6f82 2:321cad0eb507
43 continue 43 continue
44 return accumulator 44 return accumulator
45 45
46 46
47 def complement_fasta(fullfasta, subfasta): 47 def complement_fasta(fullfasta, subfasta):
48 return list(set(fullfasta) - set(subfasta)) 48 return sorted(list(set(fullfasta) - set(subfasta)))
49 49
50 50
51 def getquerylist(file): 51 def getquerylist(file):
52 querylist = [] 52 querylist = []
53 for line in open(file, 'r'): 53 for line in open(file, 'r'):