Mercurial > repos > artbio > cherry_pick_fasta
changeset 4:ba6c4aeb22ea draft
"planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/cherry_pick_fasta commit 3e1f8bb17e712d70e64ebb541775e9555acc038f"
| author | artbio |
|---|---|
| date | Fri, 21 May 2021 11:48:59 +0000 |
| parents | c282a8a47dd9 |
| children | 144b856e926c |
| files | cherry_pick_fasta.py cherry_pick_fasta.xml |
| diffstat | 2 files changed, 8 insertions(+), 4 deletions(-) [+] |
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--- a/cherry_pick_fasta.py Fri May 21 09:34:14 2021 +0000 +++ b/cherry_pick_fasta.py Fri May 21 11:48:59 2021 +0000 @@ -77,9 +77,13 @@ with open(file, 'w') as f: for header in sorted(fasta_dict): f.write('>%s\n' % header) - for i in range(line_length, len(fasta_dict[header]), line_length): - f.write('%s\n' % fasta_dict[header][i-line_length:i]) - f.write('%s\n' % fasta_dict[header][i:]) + if len(fasta_dict[header]) <= line_length: + f.write('%s\n' % fasta_dict[header]) + else: + for i in range(line_length, len(fasta_dict[header]), + line_length): + f.write('%s\n' % fasta_dict[header][i-line_length:i]) + f.write('%s\n' % fasta_dict[header][i:]) def __main__():
--- a/cherry_pick_fasta.xml Fri May 21 09:34:14 2021 +0000 +++ b/cherry_pick_fasta.xml Fri May 21 11:48:59 2021 +0000 @@ -1,4 +1,4 @@ -<tool id="cherry_pick_fasta" name="Pick Fasta sequences" version="3.0.0"> +<tool id="cherry_pick_fasta" name="Pick Fasta sequences" version="3.0.1"> <description>with header satisfying a string query</description> <requirements> <requirement type="package" version="1.70">biopython</requirement>