Mercurial > repos > artbio > concatenate_multiple_datasets
comparison catWrapper.xml @ 9:5b1b635232ed draft default tip
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/main/tools/concat_multi_datasets commit 1b75e5575ec4e5a086ee90da57a611e51af68870
| author | artbio |
|---|---|
| date | Thu, 13 Jun 2024 17:09:33 +0000 |
| parents | 5b2cc63d7a21 |
| children |
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| 8:5b2cc63d7a21 | 9:5b1b635232ed |
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| 1 <tool id="cat_multi_datasets" name="Concatenate multiple datasets" version="1.4.2"> | 1 <tool id="cat_multi_datasets" name="Concatenate multiple datasets" version="1.4.3"> |
| 2 <description>tail-to-head while specifying how</description> | 2 <description>tail-to-head while specifying how</description> |
| 3 <command><![CDATA[ | 3 <command><![CDATA[ |
| 4 #if $headers == 0: | 4 #if $headers == 0: |
| 5 #set $concat_command = "cat" | 5 #set $concat_command = "cat" |
| 6 #else: | 6 #else: |
| 261 <filter>global_condition['input_type'] == 'singles'</filter> | 261 <filter>global_condition['input_type'] == 'singles'</filter> |
| 262 </data> | 262 </data> |
| 263 <data name="paired_out_file" label="${global_condition.inputs.element_identifier}" auto_format="true"> | 263 <data name="paired_out_file" label="${global_condition.inputs.element_identifier}" auto_format="true"> |
| 264 <filter>global_condition['input_type'] == 'paired_collection' and global_condition['paired_cat_type'] == 'all'</filter> | 264 <filter>global_condition['input_type'] == 'paired_collection' and global_condition['paired_cat_type'] == 'all'</filter> |
| 265 </data> | 265 </data> |
| 266 <collection name="paired_output" type="paired" label="Concatenation by strtand"> | 266 <collection name="paired_output" type="paired" label="Concatenation by strand"> |
| 267 <discover_datasets pattern="(?P<name>.*)\.listed\.(?P<ext>.*)\.listed" format="fastq" visible="false" directory="concatenated"/> | 267 <discover_datasets pattern="(?P<name>.*)\.listed\.(?P<ext>.*)\.listed" format="fastq" visible="false" directory="concatenated"/> |
| 268 <filter>global_condition['input_type'] == 'paired_collection' and global_condition['paired_cat_type'] == 'by_strand'</filter> | 268 <filter>global_condition['input_type'] == 'paired_collection' and global_condition['paired_cat_type'] == 'by_strand'</filter> |
| 269 </collection> | 269 </collection> |
| 270 <collection name="list_output" type="list" label="Concatenation by pairs"> | 270 <collection name="list_output" type="list" label="Concatenation by pairs"> |
| 271 <discover_datasets pattern="(?P<identifier_0>.*)\.listed\.(?P<ext>.*)\.listed" format="fastq" visible="false" directory="concatenated"/> | 271 <discover_datasets pattern="(?P<identifier_0>.*)\.listed\.(?P<ext>.*)\.listed" format="fastq" visible="false" directory="concatenated"/> |