Mercurial > repos > artbio > fishertest
changeset 3:4b76708c6b95 draft default tip
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/main/tools/fisher_test commit afc67da70753a5808ade516f71e9bf133efb3268
| author | artbio |
|---|---|
| date | Sat, 14 Oct 2023 22:59:13 +0000 |
| parents | 8052d037517f |
| children | |
| files | fisher_test.xml |
| diffstat | 1 files changed, 10 insertions(+), 6 deletions(-) [+] |
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--- a/fisher_test.xml Wed Mar 17 22:08:40 2021 +0000 +++ b/fisher_test.xml Sat Oct 14 22:59:13 2023 +0000 @@ -1,7 +1,7 @@ -<tool id="fishertest" name="Fisher's exact test" version="2.22.0+galaxy0"> +<tool id="fishertest" name="Fisher's exact test" version="2.32.0+galaxy0"> <description>on two gene hit lists</description> <requirements> - <requirement type="package" version="2.22.0">bioconductor-qvalue</requirement> + <requirement type="package" version="2.32.0">bioconductor-qvalue</requirement> </requirements> <command><![CDATA[ Rscript '$fisher_test' "\${GALAXY_SLOTS:-1}" @@ -56,13 +56,17 @@ **What it does** -Runs Fisher's exact test for testing the null of independence of rows and columns in a contingency table of two columns. +Runs Fisher's exact test for testing the null of independence of rows and columns +in a contingency table of two columns. -p.pvalues: the chance of getting this data if it is independent between columns (false negative); the p-value. +p.pvalues: the chance of getting this data if it is independent between columns +(false negative); the p-value. -q.qvalues: FDR (Faslse Detection Rate) adjusted p-values; a q-value of 0.05 implies that 5% of significant tests will result in false positives. +q.qvalues: FDR (Faslse Detection Rate) adjusted p-values; +a q-value of 0.05 implies that 5% of significant tests will result in false positives. -Be aware that this test does not take into account the biological noise that would be visible if replicates were available. +Be aware that this test does not take into account the biological noise +that would be visible if replicates were available. </help>