Mercurial > repos > artbio > gsc_center_scale
comparison center_scale.xml @ 1:a96cc346819c draft
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/gsc_center_scale commit 7865eb7eb9d862e9967fe519d28df705d973fbaf
| author | artbio |
|---|---|
| date | Fri, 12 Jul 2019 11:44:50 -0400 |
| parents | bcbd7179d8ec |
| children | 163befe5f05b |
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| 0:bcbd7179d8ec | 1:a96cc346819c |
|---|---|
| 1 <tool id="center_scale" name="Center or scale (standardize) data" version="0.9.0"> | 1 <tool id="center_scale" name="Center or scale (standardize) data" version="0.9.5"> |
| 2 <description></description> | 2 <description></description> |
| 3 <requirements> | 3 <requirements> |
| 4 <requirement type="package" version="1.6.0">r-optparse</requirement> | 4 <requirement type="package" version="1.6.0">r-optparse</requirement> |
| 5 </requirements> | 5 </requirements> |
| 6 <stdio> | 6 <stdio> |
| 43 <outputs> | 43 <outputs> |
| 44 <data name="output" format="tabular" label="scale ${on_string}" /> | 44 <data name="output" format="tabular" label="scale ${on_string}" /> |
| 45 </outputs> | 45 </outputs> |
| 46 <tests> | 46 <tests> |
| 47 <test> | 47 <test> |
| 48 <param name="input" value="mini.data.counts.tsv" ftype="tabular"/> | 48 <param name="input" value="fulldata.tsv" ftype="tabular"/> |
| 49 <param name="scale" value="TRUE"/> | |
| 50 <param name="center" value="TRUE"/> | |
| 49 <output name="output" file="full_standardize.tab" ftype="tabular"/> | 51 <output name="output" file="full_standardize.tab" ftype="tabular"/> |
| 50 </test> | 52 </test> |
| 51 <test> | 53 <test> |
| 52 <param name="input" value="mini.data.counts.tsv" ftype="tabular"/> | 54 <param name="input" value="fulldata.tsv" ftype="tabular"/> |
| 53 <param name="scale" value="FALSE"/> | 55 <param name="scale" value="FALSE"/> |
| 56 <param name="center" value="TRUE"/> | |
| 54 <output name="output" file="full_center.tab" ftype="tabular"/> | 57 <output name="output" file="full_center.tab" ftype="tabular"/> |
| 55 </test> | 58 </test> |
| 56 <test> | 59 <test> |
| 57 <param name="input" value="mini.data.counts.tsv" ftype="tabular" /> | 60 <param name="input" value="fulldata.tsv" ftype="tabular"/> |
| 61 <param name="scale" value="TRUE"/> | |
| 62 <param name="center" value="FALSE"/> | |
| 63 <output name="output" file="full_scale.tab" ftype="tabular"/> | |
| 64 </test> | |
| 65 <test> | |
| 66 <param name="input" value="fulldata.tsv" ftype="tabular" /> | |
| 67 <param name="scale" value="TRUE"/> | |
| 68 <param name="center" value="TRUE"/> | |
| 58 <param name="factor_options" value="TRUE" /> | 69 <param name="factor_options" value="TRUE" /> |
| 59 <param name="file" value="mini.data.factor.tsv" ftype="tabular" /> | 70 <param name="file" value="fulldata.map.tsv" ftype="tabular" /> |
| 60 <output name="output" file="group_standardize.tab" ftype="tabular"/> | 71 <output name="output" file="group_standardize.tab" ftype="tabular"/> |
| 61 </test> | 72 </test> |
| 62 <test> | 73 <test> |
| 63 <param name="input" value="mini.data.counts.tsv" ftype="tabular" /> | 74 <param name="input" value="fulldata.tsv" ftype="tabular" /> |
| 64 <param name="scale" value="FALSE"/> | 75 <param name="scale" value="FALSE"/> |
| 76 <param name="center" value="TRUE"/> | |
| 65 <param name="factor_options" value="TRUE" /> | 77 <param name="factor_options" value="TRUE" /> |
| 66 <param name="file" value="mini.data.factor.tsv" ftype="tabular" /> | 78 <param name="file" value="fulldata.map.tsv" ftype="tabular" /> |
| 67 <output name="output" file="group_center.tab" ftype="tabular"/> | 79 <output name="output" file="group_center.tab" ftype="tabular"/> |
| 80 </test> | |
| 81 <test> | |
| 82 <param name="input" value="fulldata.tsv" ftype="tabular" /> | |
| 83 <param name="scale" value="TRUE"/> | |
| 84 <param name="center" value="FALSE"/> | |
| 85 <param name="factor_options" value="TRUE" /> | |
| 86 <param name="file" value="fulldata.map.tsv" ftype="tabular" /> | |
| 87 <output name="output" file="group_scale.tab" ftype="tabular"/> | |
| 68 </test> | 88 </test> |
| 69 </tests> | 89 </tests> |
| 70 <help> | 90 <help> |
| 71 | 91 |
| 72 **What it does** | 92 **What it does** |